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探索 Tapelifts 作为一种双重工作流程 STR 扩增的方法。

Exploring tapelifts as a method for dual workflow STR amplification.

机构信息

Biological Sciences Building, Flinders University, Bedford Park 5042, Australia; Biological Sciences Building, College of Science and Engineering, Flinders University, Bedford Park 5042, Australia.

Biological Sciences Building, Flinders University, Bedford Park 5042, Australia; Biological Sciences Building, College of Science and Engineering, Flinders University, Bedford Park 5042, Australia; Forensic Science South Australia, 21 Divett Pl, Adelaide, SA 5000, Australia.

出版信息

Forensic Sci Int Genet. 2022 Mar;57:102653. doi: 10.1016/j.fsigen.2021.102653. Epub 2021 Dec 11.

Abstract

Although a version of direct PCR is implemented in forensic laboratories for reference material, its incorporation into workflow for the analysis of touch DNA, as a form of latent DNA, from casework exhibits is not. In addition to concerns about increased sensitivity causing more complex mixtures or the generation of more genetic data implicating an individual superfluous to the context of the alleged event, the complete use of the collected sample in the PCR as template has meant that there is no possibility for data reproducibility when needed. Here it is proposed that the use of tapelifts in touch DNA collection can facilitate replicate direct PCR analysis from a single sample allowing the sample to be re-tested. If all portions of the tapelift result in profiles with allelic and likelihood ratio concordance, these sub-samples may be accepted as technical replicates, thus meeting any accreditation guideline requirements. Furthermore, we assess the use of a single tapelift for both direct PCR and extraction-based PCR workflows to illustrate the potential for benefits of both systems to be facilitated. DNA was deposited by three donors onto six substrates with five sample replicates of each condition. Separation of each tapelift into three portions for three direct PCRs ensued using VeriFiler™ Plus. Separation of single tapelifts into three direct PCRs showed no statistical difference in donor allele calls or RFU, or subsequent LRs associated with their profiles. Comparison of profiles within the single tapelift showed more similarity, with high mixture-to-mixture match likelihoods, than when these sub-samples were compared with profiles generated from other samples. This allows each sub-sample taken from the tapelift to be considered as technical replicates. For dual workflow facilitation assessment, one donor deposited DNA through touch onto six substrates with five research replicates of each. Separation of single tapelifts into two portions, one for direct PCR and the retention and use of the remaining portion for extraction and subsequent PCR, showed no significant difference in allelic yield and subsequent donor comparison LRs. Comparison of deconvoluted profiles produced from a single tapelift showed high mixture-to-mixture match likelihoods, supporting DNA donor concordance. This indicates that removing a portion of a tapelift for direct PCR amplification, while processing the remainder through standard processes, allows increased sensitivity through direct PCR while offering the preparation of an eluate suitable for repeated analyses.

摘要

虽然法医实验室实施了一种直接 PCR 版本作为参考材料,但将其纳入从案件中分析潜伏 DNA(即接触 DNA)的工作流程中并不适用。除了担心增加的灵敏度会导致更复杂的混合物或生成更多与涉嫌事件背景无关的个体遗传数据之外,由于 PCR 模板完全使用收集的样本,因此在需要时无法进行数据重现性。这里提出,在接触 DNA 采集时使用胶带提升物可以方便地从单个样本中进行重复的直接 PCR 分析,从而可以对样本进行重新测试。如果胶带提升物的所有部分都产生等位基因和似然比一致的谱,则可以接受这些亚样本作为技术重复,从而满足任何认证指南的要求。此外,我们评估了在直接 PCR 和基于提取的 PCR 工作流程中使用单个胶带提升物的情况,以说明两个系统的优势都可以得到促进。将三个供体的 DNA 分别沉积在六个基质上,每个条件下有五个样本重复。使用 VeriFiler™ Plus 将每个胶带提升物分成三部分进行三次直接 PCR。从单个胶带提升物中分离出三个直接 PCR 后,供体等位基因的调用或 RFU 或与它们的谱相关的后续 LR 没有统计学差异。在单个胶带提升物内的谱之间进行比较表明,与从其他样本生成的谱相比,具有更高的混合物到混合物匹配可能性。这允许从胶带提升物中取出的每个亚样本都被视为技术重复。对于双重工作流程促进评估,一个供体通过触摸将 DNA 沉积在六个基质上,每个有五个研究重复。将单个胶带提升物分成两部分,一部分用于直接 PCR,其余部分保留并用于提取和随后的 PCR,在等位基因产量和随后的供体比较 LR 方面没有显著差异。对从单个胶带提升物产生的去卷积谱进行比较表明,混合物到混合物的匹配可能性很高,支持 DNA 供体一致性。这表明,通过直接 PCR 扩增去除胶带提升物的一部分,同时通过标准流程处理其余部分,可以通过直接 PCR 提高灵敏度,同时提供适合重复分析的洗脱液。

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