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韩国菘蓝中的一种新型双生病毒的鉴定。

Identification of a Novel Geminivirus in in Korea.

机构信息

Department of Integrative Biotechnology, Sungkyunkwan University, Suwon 16419, Korea.

Crop Protection Division, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju 55365, Korea.

出版信息

Viruses. 2021 Nov 28;13(12):2385. doi: 10.3390/v13122385.

DOI:10.3390/v13122385
PMID:34960653
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8705360/
Abstract

, common name ash, belongs to the family and is found in China, Korea, North America, the Indian subcontinent, and eastern Russia. It has been used as a traditional herbal medicine in Korea and various parts of the world due to its chemical constituents. During a field survey in March 2019, mild vein thickening (almost negligible) was observed in a few ash trees. High-throughput sequencing of libraries of total DNA from ash trees, rolling-circle amplification (RCA), and polymerase chain reaction (PCR) allowed the identification of a This virus has five confirmed open reading frames along with a possible sixth open reading frame that encodes the movement protein and is almost 2.7 kb in size, with a nonanucleotide and stem loop structure identical to begomoviruses. In terms of its size and structure, this virus strongly resembles begomoviruses, but does not show any significant sequence identity with them. To confirm movement of the virus within the trees, different parts of infected trees were examined, and viral movement was successfully observed. No satellite molecules or DNA B were identified. Two-step PCR confirmed the virion and complementary strands during replication in both freshly collected infected samples of ash tree and samples agro-inoculated with infectious clones. This taxon is so distantly grouped from other known geminiviruses that it likely represents a new geminivirus genus.

摘要

白蜡树,俗名山指甲,属于木犀科,在中国、韩国、北美、印度次大陆和俄罗斯东部都有分布。由于其化学成分,它已被用作韩国和世界上许多地方的传统草药。在 2019 年 3 月的一次实地调查中,发现少数白蜡树的静脉有轻微的增厚(几乎可以忽略不计)。对来自白蜡树的总 DNA 文库进行高通量测序、滚环扩增(RCA)和聚合酶链反应(PCR),鉴定出一种 该病毒有五个已确认的开放阅读框,加上一个可能的第六个开放阅读框,编码运动蛋白,大小约为 2.7kb,具有与双生病毒相同的非核苷酸和茎环结构。就其大小和结构而言,该病毒强烈类似于双生病毒,但与它们没有任何显著的序列同一性。为了确认病毒在树木内的运动,对感染树木的不同部位进行了检查,并成功观察到了病毒的运动。未鉴定出卫星分子或 DNA B。两步 PCR 在对新鲜采集的感染白蜡树样本和 用传染性克隆接种的样本进行复制时,确认了病毒粒子和互补链。这个分类群与其他已知的双生病毒如此疏远,它可能代表一个新的双生病毒属。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/e384676bb0ac/viruses-13-02385-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/8cb7c3cc5104/viruses-13-02385-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/5ef26dd4f5d9/viruses-13-02385-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/ba19de353af4/viruses-13-02385-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/28c478ed5010/viruses-13-02385-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/145afd1fb482/viruses-13-02385-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/3bdda1eb942d/viruses-13-02385-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/fb5e0c91dcff/viruses-13-02385-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/e384676bb0ac/viruses-13-02385-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/8cb7c3cc5104/viruses-13-02385-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/5ef26dd4f5d9/viruses-13-02385-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/ba19de353af4/viruses-13-02385-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/28c478ed5010/viruses-13-02385-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/145afd1fb482/viruses-13-02385-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/3bdda1eb942d/viruses-13-02385-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/fb5e0c91dcff/viruses-13-02385-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1295/8705360/e384676bb0ac/viruses-13-02385-g008.jpg

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