Department of Biomedical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States.
J Chem Inf Model. 2022 Jan 10;62(1):79-87. doi: 10.1021/acs.jcim.1c01307. Epub 2021 Dec 28.
Thole-style mutual induction models for molecular polarization have been adopted by several popular polarizable force fields (FFs) for their simplicity and transferability. The atomic polarizability parameters of these models are typically derived by fitting to or/and experimental molecular polarizabilities. In this work, we improve upon Thole polarizability parameters by employing both high-level quantum mechanics molecular polarizabilities and electrostatic potential (ESP) responses on three-dimensional grids. Our results indicate that the two approaches to derive atomic polarizability parameters are both effective, while the ESP approaches can also capture the polarization for the atoms with lone pair electrons. The resulting polarizability parameters have been validated on a set of over 7200 molecules covering the most common elements found in organic molecules (C, H, O, N, P, S, F, Cl, Br, and I). These parameters have also been tested on the experimentally measured molecular polarizabilities of 422 molecules. The final set of parameters derived in this work show notable improvement over the current AMOEBA set. The result is a highly transferable, expanded set of atomic polarizabilities defined by the local chemical environment in the form of SMARTS patterns. These parameters can be used directly in molecular mechanics polarizable potential energy functions such as AMOEBA, AMOEBA+, and other Thole-style models.
已经采用了几种流行的极化力场 (FF) 的 Thole 式分子极化相互感应模型,因其简单性和可转移性。这些模型的原子极化率参数通常通过拟合 或/和实验分子极化率来推导。在这项工作中,我们通过使用高精度量子力学分子极化率和三维网格上的静电势能 (ESP) 响应来改进 Thole 极化率参数。我们的结果表明,推导原子极化率参数的两种方法都有效,而 ESP 方法也可以捕捉具有孤对电子的原子的极化。得到的极化率参数已在涵盖有机分子中最常见元素(C、H、O、N、P、S、F、Cl、Br 和 I)的超过 7200 个分子的一组中进行了验证。这些参数还在 422 个分子的实验测量分子极化率上进行了测试。本工作中得出的参数集与当前的 AMOEBA 集相比有显著改进。结果是一套高度可转移的、由局部化学环境定义的、以 SMARTS 模式表示的扩展原子极化率参数集。这些参数可直接用于分子力学极化势能函数,如 AMOEBA、AMOEBA+和其他 Thole 式模型。