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在 L. 中全基因组鉴定和基因家族成员的表达谱

Genome-Wide Identification and Expression Profile of Gene Family Members in L.

机构信息

State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China.

College of Life Science, China Jiliang University, Hangzhou 310058, China.

出版信息

Int J Mol Sci. 2021 Dec 31;23(1):469. doi: 10.3390/ijms23010469.

Abstract

Hyperosmolality and various other stimuli can trigger an increase in cytoplasmic-free calcium concentration ([Ca]). Members of the (L.) () gene family are reported to be involved in sensing extracellular changes to trigger hyperosmolality-induced [Ca] increases and controlling stomatal closure during immune signaling. Wheat ( L.) is a very important food crop, but there are few studies of its gene family members. In this study, 42 members were identified in the wheat genome, and phylogenetic analysis can divide them into four clades. The members of each clade have similar gene structures, conserved motifs, and domains. genes were predicted to be regulated by cis-acting elements such as STRE, MBS, DRE1, ABRE, etc. Quantitative PCR results showed that they have different expression patterns in different tissues. The expression profiles of 15 selected were examined after PEG (polyethylene glycol), NaCl, and ABA (abscisic acid) treatment. All 15 members responded to PEG treatment, while /- responded simultaneously to PEG and ABA. This study informs research into the biological function and evolution of and lays the foundation for the breeding and genetic improvement of wheat.

摘要

高渗胁迫和其他各种刺激可以引发细胞质游离钙浓度 ([Ca]) 的增加。据报道,(L.)()基因家族的成员参与感知细胞外变化,以触发高渗诱导的 [Ca] 增加,并在免疫信号转导过程中控制气孔关闭。小麦(L.)是一种非常重要的粮食作物,但对其基因家族成员的研究较少。在这项研究中,在小麦基因组中鉴定出 42 个成员,系统发育分析可以将它们分为四个分支。每个分支的成员具有相似的基因结构、保守基序和结构域。预测基因受到顺式作用元件(如 STRE、MBS、DRE1、ABRE 等)的调控。定量 PCR 结果表明,它们在不同组织中有不同的表达模式。对 15 个选定的进行了 PEG(聚乙二醇)、NaCl 和 ABA(脱落酸)处理后的表达谱分析。所有 15 个成员均对 PEG 处理有反应,而 /- 则同时对 PEG 和 ABA 有反应。本研究为研究的生物学功能和进化提供了信息,并为小麦的育种和遗传改良奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0154/8745296/6ed2065b22d6/ijms-23-00469-g001.jpg

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