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基于蛋白质的模型为复杂的镍金属酶提供了机制上的见解。

Protein-based models offer mechanistic insight into complex nickel metalloenzymes.

机构信息

Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.

Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.

出版信息

Curr Opin Chem Biol. 2022 Apr;67:102110. doi: 10.1016/j.cbpa.2021.102110. Epub 2022 Jan 31.

DOI:10.1016/j.cbpa.2021.102110
PMID:35101820
Abstract

There are ten nickel enzymes found across biological systems, each with a distinct active site and reactivity that spans reductive, oxidative, and redox-neutral processes. We focus on the reductive enzymes, which catalyze reactions that are highly germane to the modern-day climate crisis: [NiFe] hydrogenase, carbon monoxide dehydrogenase, acetyl coenzyme A synthase, and methyl coenzyme M reductase. The current mechanistic understanding of each enzyme system is reviewed along with existing knowledge gaps, which are addressed through the development of protein-derived models, as described here. This opinion is intended to highlight the advantages of using robust protein scaffolds for modeling multiscale contributions to reactivity and inspire the development of novel artificial metalloenzymes for other small molecule transformations.

摘要

生物系统中发现了十种镍酶,每种酶都具有独特的活性位点和反应性,涵盖了还原、氧化和氧化还原中性过程。我们专注于还原酶,它们催化与现代气候危机高度相关的反应:[NiFe]氢化酶、一氧化碳脱氢酶、乙酰辅酶 A 合酶和甲基辅酶 M 还原酶。本文回顾了每个酶系统的当前机械理解以及现有知识空白,并通过开发蛋白质衍生模型来解决这些问题。本文旨在强调使用稳健的蛋白质支架来模拟反应性的多尺度贡献的优势,并激发为其他小分子转化开发新型人工金属酶的发展。

相似文献

1
Protein-based models offer mechanistic insight into complex nickel metalloenzymes.基于蛋白质的模型为复杂的镍金属酶提供了机制上的见解。
Curr Opin Chem Biol. 2022 Apr;67:102110. doi: 10.1016/j.cbpa.2021.102110. Epub 2022 Jan 31.
2
How to Build a Metalloenzyme: Lessons from a Protein-Based Model of Acetyl Coenzyme A Synthase.如何构建金属酶:来自乙酰辅酶A合酶蛋白质模型的经验教训。
Acc Chem Res. 2023 May 2;56(9):984-993. doi: 10.1021/acs.accounts.2c00824. Epub 2023 Apr 12.
3
Nickel-dependent metalloenzymes.镍依赖性金属酶。
Arch Biochem Biophys. 2014 Feb 15;544:142-52. doi: 10.1016/j.abb.2013.09.002. Epub 2013 Sep 10.
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Structure, function, and biosynthesis of nickel-dependent enzymes.镍依赖酶的结构、功能和生物合成。
Protein Sci. 2020 May;29(5):1071-1089. doi: 10.1002/pro.3836. Epub 2020 Feb 18.
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Hydrogenases.氢化酶
Methods Mol Biol. 2019;1876:65-88. doi: 10.1007/978-1-4939-8864-8_5.
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Repurposing metalloproteins as mimics of natural metalloenzymes for small-molecule activation.将金属蛋白酶作为天然金属酶的模拟物进行再利用,以激活小分子。
J Inorg Biochem. 2021 Jun;219:111430. doi: 10.1016/j.jinorgbio.2021.111430. Epub 2021 Mar 18.
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Nickel-binding proteins.镍结合蛋白
Cell Mol Life Sci. 1999 Nov 15;56(7-8):604-25. doi: 10.1007/s000180050456.
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Modeling the active sites in metalloenzymes 5. The heterolytic bond cleavage of H(2) in the [NiFe] hydrogenase of desulfovibrio gigas by a nucleophilic addition mechanism.金属酶活性位点的建模5. 嗜热栖热菌[NiFe]氢化酶中H₂通过亲核加成机制进行的异裂键裂解
Inorg Chem. 2001 Nov 19;40(24):6201-3. doi: 10.1021/ic0107274.
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Nickel uptake and utilization by microorganisms.微生物对镍的吸收与利用
FEMS Microbiol Rev. 2003 Jun;27(2-3):239-61. doi: 10.1016/S0168-6445(03)00042-1.
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Proton Transfer Mechanisms in Bimetallic Hydrogenases.双金属氢化酶中的质子转移机制。
Acc Chem Res. 2021 Jan 5;54(1):232-241. doi: 10.1021/acs.accounts.0c00651. Epub 2020 Dec 16.

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