Zhao Chen, Heuslein Joshua L, Zhang Yu, Annex Brian H, Popel Aleksander S
School of Pharmacy, Nanjing Medical University, Nanjing, Jiangsu, China.
Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
JACC Basic Transl Sci. 2022 Jan 5;7(1):28-50. doi: 10.1016/j.jacbts.2021.10.014. eCollection 2022 Jan.
In peripheral arterial disease (PAD), the degree of endogenous capacity to modulate revascularization of limb muscle is central to the management of leg ischemia. To characterize the multiscale and multicellular nature of revascularization in PAD, we have developed the first computational systems biology model that mechanistically incorporates intracellular, cellular, and tissue-level features critical for the dynamic reconstitution of perfusion after occlusion-induced ischemia. The computational model was specifically formulated for a preclinical animal model of PAD (mouse hindlimb ischemia [HLI]), and it has gone through multilevel model calibration and validation against a comprehensive set of experimental data so that it accurately captures the complex cellular signaling, cell-cell communication, and function during post-HLI perfusion recovery. As an example, our model simulations generated a highly detailed description of the time-dependent spectrum-like macrophage phenotypes in HLI, and through model sensitivity analysis we identified key cellular processes with potential therapeutic significance in the pathophysiology of PAD. Furthermore, we computationally evaluated the in vivo effects of different targeted interventions on post-HLI tissue perfusion recovery in a model-based, data-driven, virtual mouse population and experimentally confirmed the therapeutic effect of a novel model-predicted intervention in real HLI mice. This novel multiscale model opens up a new avenue to use integrative systems biology modeling to facilitate translational research in PAD.
在周围动脉疾病(PAD)中,调节肢体肌肉血管再通的内源性能力程度是腿部缺血管理的核心。为了表征PAD中血管再通的多尺度和多细胞性质,我们开发了首个计算系统生物学模型,该模型机械地整合了对闭塞性缺血后灌注动态重建至关重要的细胞内、细胞和组织水平特征。该计算模型是专门为PAD的临床前动物模型(小鼠后肢缺血[HLI])制定的,并且已经针对一组全面的实验数据进行了多级模型校准和验证,以便它能够准确捕捉HLI后灌注恢复过程中复杂的细胞信号传导、细胞间通讯和功能。例如,我们的模型模拟生成了对HLI中随时间变化的光谱样巨噬细胞表型的高度详细描述,并且通过模型敏感性分析,我们确定了在PAD病理生理学中具有潜在治疗意义的关键细胞过程。此外,我们在基于模型、数据驱动的虚拟小鼠群体中通过计算评估了不同靶向干预对HLI后组织灌注恢复的体内效应,并在真实的HLI小鼠中通过实验证实了一种新的模型预测干预的治疗效果。这个新的多尺度模型开辟了一条新途径,可利用综合系统生物学建模来促进PAD的转化研究。