School of Life Sciences, Yunnan Institute of Microbiology, Yunnan University, Kunming, 650091, Yunnan, People's Republic of China.
Weixi Sub-Bureau, Baima Snow Mountain National Nature Reserve, Diqing, 674400, Yunnan, People's Republic of China.
Curr Microbiol. 2022 Feb 7;79(3):92. doi: 10.1007/s00284-022-02763-2.
A novel bacterium designated WQ 366 was isolated from the faeces of Bos taurus, foraging on the slopes of the Baima Snow Mountain in Yunnan, China. The isolate grew optimally at 30 ℃ and pH 7.0-8.0 without NaCl. The cells were Gram-stain-negative, aerobic, rod-shaped, non-gliding, catalase-positive, and produced yellow color colonies on Columbia Agar. A polyphasic study was applied to clarify its taxonomic position through 16S rRNA gene and genome sequence analysis, and other extensive biological typing. Phylogenetic analysis revealed that the isolate was affiliated to the genus Sphingobacterium and its 16S rRNA gene sequence was closely related to Sphingobacterium bovisgrunnientis YK2 (97.3%), Sphingobacterium composti T5-12 (96.4%), and Sphingobacterium cavernae 5.0403-2 (96.4%). The calculated whole genome average nucleotide identity (ANI) and the digital DNA-DNA hybridization values between strain WQ 366 and the three related strains were 78.3, 78.6, 73.9 and 21.2, 21.2, 21.0%, respectively. The predominant fatty acids (>10%) were iso-C, iso-C 3-OH, Summed Feature 3 (C ω7c and/or C ω6c), and Summed feature 9 (iso-C ω9c and 10-methyl C). The main polar lipids were PE, GPL, GL, and PL. MK-7 was the major menaquinone. The genome size and the G + C content of WQ 366 was 4.1 Mb and 34.6%, respectively. All these results indicated that strain WQ 366 represents a novel species of the Sphingobacterium genus. Therefore, the name Sphingobacterium bovistauri sp. nov. is proposed, and the type strain is WQ 366 (= CCTCC AA 2020029 = KCTC 82395).
从中国云南白马雪山山坡上觅食的黄牛粪便中分离到一株被命名为 WQ 366 的新型细菌。该分离物在 30°C 和 pH7.0-8.0 下生长最佳,不需要 NaCl。细胞革兰氏染色阴性,需氧,杆状,非滑行,过氧化氢酶阳性,在哥伦比亚琼脂上产生黄色菌落。通过 16S rRNA 基因和基因组序列分析以及其他广泛的生物分型,应用多相研究来阐明其分类地位。系统发育分析表明,该分离株属于鞘氨醇单胞菌属,其 16S rRNA 基因序列与牛栖鞘氨醇单胞菌 YK2(97.3%)、复合鞘氨醇单胞菌 T5-12(96.4%)和腔隙鞘氨醇单胞菌 5.0403-2(96.4%)最为密切相关。菌株 WQ 366 与这 3 株相关菌株的全基因组平均核苷酸同一性(ANI)和数字 DNA-DNA 杂交值分别为 78.3%、78.6%、73.9%和 21.2%、21.2%、21.0%。优势脂肪酸(>10%)为 iso-C、iso-C 3-OH、Summed Feature 3(C ω7c 和/或 C ω6c)和 Summed feature 9(iso-C ω9c 和 10-甲基 C)。主要极性脂为 PE、GPL、GL 和 PL。MK-7 是主要的menaquinone。WQ 366 的基因组大小和 G+C 含量分别为 4.1 Mb 和 34.6%。所有这些结果表明,菌株 WQ 366 代表鞘氨醇单胞菌属的一个新种。因此,提议将其命名为牛栖鞘氨醇单胞菌新种,其模式菌株为 WQ 366(= CCTCC AA 2020029 = KCTC 82395)。