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线粒体在肿瘤进展中的作用:不同类型癌症中线粒体 DNA 变异的网络。

Mitochondria in tumour progression: a network of mtDNA variants in different types of cancer.

机构信息

Laboratory of Human and Medical Genetics, Graduate Program in Genetics and Molecular Biology, Federal University of Pará, Av. Augusto Correa, 01, Belém, PA, 66075-110, Brazil.

Graduate Program in Oncology and Medical Sciences, Center of Oncology Research, Federal University of Pará, Rua dos Mundurucus, Belém, PA, 4487, 66073-005, Brazil.

出版信息

BMC Genom Data. 2022 Feb 18;23(1):16. doi: 10.1186/s12863-022-01032-2.

Abstract

BACKGROUND

Mitochondrial participation in tumorigenesis and metastasis has been studied for many years, but several aspects of this mechanism remain unclear, such as the association of mitochondrial DNA (mtDNA) with different cancers. Here, based on two independent datasets, we modelled an mtDNA mutation-cancer network by systematic integrative analysis including 37 cancer types to identify the mitochondrial variants found in common among them.

RESULTS

Our network showed mtDNA associations between gastric cancer and other cancer types, particularly kidney, liver, and prostate cancers, which is suggestive of a potential role of such variants in the metastatic processes among these cancer types. A graph-based interactive web tool was made available at www2.lghm.ufpa.br/mtdna. We also highlighted that most shared variants were in the MT-ND4, MT-ND5 and D-loop, and that some of these variants were nonsynonymous, indicating a special importance of these variants and regions regarding cancer progression, involving genomic and epigenomic alterations.

CONCLUSIONS

This study reinforces the importance of studying mtDNA in cancer and offers new perspectives on the potential involvement of different mitochondrial variants in cancer development and metastasis.

摘要

背景

多年来,人们一直在研究线粒体在肿瘤发生和转移中的作用,但该机制的几个方面仍不清楚,例如线粒体 DNA(mtDNA)与不同癌症的关联。在这里,我们基于两个独立的数据集,通过系统的综合分析,包括 37 种癌症类型,构建了一个 mtDNA 突变-癌症网络,以确定它们之间共同存在的线粒体变体。

结果

我们的网络显示了胃癌与其他癌症类型之间的 mtDNA 关联,特别是与肾癌、肝癌和前列腺癌之间的关联,这表明这些变体可能在这些癌症类型的转移过程中发挥作用。我们还制作了一个基于图的交互式网络工具,可在 www2.lghm.ufpa.br/mtdna 上获取。我们还强调了大多数共同的变体位于 MT-ND4、MT-ND5 和 D 环中,并且其中一些变体是非同义的,这表明这些变体和区域对于癌症进展具有特殊的重要性,涉及基因组和表观基因组的改变。

结论

本研究强调了在癌症中研究 mtDNA 的重要性,并为不同线粒体变体在癌症发展和转移中的潜在参与提供了新的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88dd/8857862/4f55592d9e4a/12863_2022_1032_Fig1_HTML.jpg

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