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通过整合生物信息学分析和实验验证,THRSP 被鉴定为潜在的肝癌标志物。

THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation.

机构信息

The Department of Infectious Diseases, The Affiliated Hospital of Southwest Medical University, Luzhou 646000, China.

The Department of Tuberculosis, The Affiliated Hospital of Southwest Medical University, Luzhou 646000, China.

出版信息

Aging (Albany NY). 2022 Feb 23;14(4):1743-1766. doi: 10.18632/aging.203900.

Abstract

Hepatocellular carcinoma (HCC) is the most common malignant liver tumor with high mortality and poor prognosis worldwide. This study aimed to identify hub genes and investigate the underlying molecular mechanisms in HCC progression by integrated bioinformatics analysis and experimental validation. Based on the Gene Expression Omnibus (GEO) databases and The Cancer Genome Atlas (TCGA), 12 critical differential co-expression genes were identified between tumor and normal tissues. Via survival analysis, we found higher expression of LCAT, ACSM3, IGF1, SRD5A2, THRSP and ACADS was associated with better prognoses in HCC patients. Among which, THRSP was selected for the next investigations. We found that THRSP mRNA expression was negatively correlated with its methylation and closely associated with clinical characteristics in HCC patients. Moreover, THRSP expression had a negative correlation with the infiltration levels of several immune cells (e.g., B cells and CD4+ T cells). qRT-PCR verified that THRSP was lower expressed in HCC tissues and cell lines compared with control. Silencing of THRSP promoted the migration, invasion, proliferation, and inhibited cell apoptosis of HCCLM and Huh7 cell lines. Decreased expression of THRSP promoted HCC progression by NF-κB, ERK1/2, and p38 MAPK signaling pathways. In conclusion, THRSP might serve as a novel biomarker and therapeutic target of HCC.

摘要

肝细胞癌 (HCC) 是全球最常见的恶性肝肿瘤,死亡率和预后均较差。本研究旨在通过整合生物信息学分析和实验验证,鉴定 HCC 进展中的关键基因,并探讨其潜在的分子机制。基于基因表达综合数据库 (GEO) 和癌症基因组图谱 (TCGA),我们鉴定了肿瘤组织和正常组织之间 12 个关键的差异共表达基因。通过生存分析,我们发现 LCAT、ACSM3、IGF1、SRD5A2、THRSP 和 ACADS 的高表达与 HCC 患者的较好预后相关。其中,THRSP 被选择用于进一步的研究。我们发现 THRSP mRNA 的表达与甲基化呈负相关,并且与 HCC 患者的临床特征密切相关。此外,THRSP 的表达与几种免疫细胞(如 B 细胞和 CD4+T 细胞)的浸润水平呈负相关。qRT-PCR 验证了 THRSP 在 HCC 组织和细胞系中的表达水平低于对照。THRSP 沉默促进了 HCCLM 和 Huh7 细胞系的迁移、侵袭、增殖,并抑制了细胞凋亡。THRSP 的下调通过 NF-κB、ERK1/2 和 p38 MAPK 信号通路促进 HCC 的进展。总之,THRSP 可能作为 HCC 的一个新的生物标志物和治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f984/8908915/ef8568711951/aging-14-203900-g001.jpg

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