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The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing.通过超深度全基因组测序揭示自闭症和神经典型个体大脑皮层中的体细胞突变景观。
Nat Neurosci. 2021 Feb;24(2):176-185. doi: 10.1038/s41593-020-00765-6. Epub 2021 Jan 11.
2
Exploring the biological role of postzygotic and germinal de novo mutations in ASD.探索合子后和生殖系从头突变在 ASD 中的生物学作用。
Sci Rep. 2021 Jan 11;11(1):319. doi: 10.1038/s41598-020-79412-w.
3
Genome-wide detection of tandem DNA repeats that are expanded in autism.全基因组检测在孤独症中扩增的串联 DNA 重复。
Nature. 2020 Oct;586(7827):80-86. doi: 10.1038/s41586-020-2579-z. Epub 2020 Jul 27.
4
A framework for an evidence-based gene list relevant to autism spectrum disorder.一个与自闭症谱系障碍相关的基于证据的基因列表框架。
Nat Rev Genet. 2020 Jun;21(6):367-376. doi: 10.1038/s41576-020-0231-2. Epub 2020 Apr 21.
5
SCN1A-related phenotypes: Epilepsy and beyond.SCN1A 相关表型:癫痫及其他。
Epilepsia. 2019 Dec;60 Suppl 3:S17-S24. doi: 10.1111/epi.16386.
6
A large data resource of genomic copy number variation across neurodevelopmental disorders.一个涵盖多种神经发育障碍的基因组拷贝数变异的大型数据资源。
NPJ Genom Med. 2019 Oct 7;4:26. doi: 10.1038/s41525-019-0098-3. eCollection 2019.
7
Neurobehavioral phenotype of autism spectrum disorder associated with germline heterozygous mutations in PTEN.自闭症谱系障碍的神经行为表型与 PTEN 种系杂合突变相关。
Transl Psychiatry. 2019 Oct 8;9(1):253. doi: 10.1038/s41398-019-0588-1.
8
g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update).g:Profiler:一个用于功能富集分析和基因列表转换的网络服务器(2019 更新)。
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9
Autism spectrum disorder and cognitive profile in children with Dravet syndrome: Delineation of a specific phenotype.德雷维特综合征患儿的自闭症谱系障碍和认知特征:一种特定表型的描述。
Epilepsia Open. 2018 Dec 20;4(1):40-53. doi: 10.1002/epi4.12281. eCollection 2019 Mar.
10
Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0).PANTHER 分类系统(版本 14.0)进行大规模基因组和基因功能分析的方案更新。
Nat Protoc. 2019 Mar;14(3):703-721. doi: 10.1038/s41596-019-0128-8. Epub 2019 Feb 25.

自闭症谱系障碍脑组织的突变景观。

Mutational Landscape of Autism Spectrum Disorder Brain Tissue.

机构信息

Biosciences Institute, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.

The Centre for Applied Genomics (TCAG), The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada.

出版信息

Genes (Basel). 2022 Jan 24;13(2):207. doi: 10.3390/genes13020207.

DOI:10.3390/genes13020207
PMID:35205252
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8871846/
Abstract

Rare post-zygotic mutations in the brain are now known to contribute to several neurodevelopmental disorders, including autism spectrum disorder (ASD). However, due to the limited availability of brain tissue, most studies rely on estimates of mosaicism from peripheral samples. In this study, we undertook whole exome sequencing on brain tissue from 26 ASD brain donors from the Harvard Brain Tissue Resource Center (HBTRC) and ascertained the presence of post-zygotic and germline mutations categorized as pathological, including those impacting known ASD-implicated genes. Although quantification did not reveal enrichment for post-zygotic mutations compared with the controls ( = 15), a small number of pathogenic, potentially ASD-implicated mutations were identified, notably in and . Furthermore, germline mutations were identified in the same tissue samples in several key ASD genes, including ,  , and The establishment of tissue resources that are available to the scientific community will facilitate the discovery of new mutations for ASD and other neurodevelopmental disorders.

摘要

现在已知,胚胎后基因突变会导致多种神经发育障碍,包括自闭症谱系障碍(ASD)。然而,由于脑组织的可用性有限,大多数研究依赖于外周样本的嵌合体估计。在这项研究中,我们对来自哈佛脑组织资源中心(HBTRC)的 26 名 ASD 脑捐赠者的脑组织进行了全外显子组测序,并确定了存在胚后和种系突变,这些突变被归类为病理性突变,包括那些影响已知的 ASD 相关基因的突变。虽然与对照组相比(=15),定量分析并未显示胚后突变的富集,但仍发现了少数潜在的致病性 ASD 相关突变,特别是在 和 中。此外,在几个关键的 ASD 基因中,包括 、 、和 ,在相同的组织样本中也发现了种系突变。建立可供科学界使用的组织资源将有助于发现 ASD 和其他神经发育障碍的新突变。