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富含脯氨酸的类伸展蛋白受体激酶(PERKs)基因家族的全基因组分析与鉴定揭示了它们在小麦不同发育阶段和胁迫条件下的作用。

Genome-Wide Analysis and Characterization of the Proline-Rich Extensin-like Receptor Kinases (PERKs) Gene Family Reveals Their Role in Different Developmental Stages and Stress Conditions in Wheat ( L.).

作者信息

Kesawat Mahipal Singh, Kherawat Bhagwat Singh, Singh Anupama, Dey Prajjal, Routray Snehasish, Mohapatra Chinmayee, Saha Debanjana, Ram Chet, Siddique Kadambot H M, Kumar Ajay, Gupta Ravi, Chung Sang-Min, Kumar Manu

机构信息

Department of Genetics and Plant Breeding, Faculty of Agriculture, Sri Sri University, Cuttack 754006, Odisha, India.

School of Biological Sciences and Institute for Molecular Biology and Genetics, Seoul National University, Seoul 08826, Korea.

出版信息

Plants (Basel). 2022 Feb 11;11(4):496. doi: 10.3390/plants11040496.

DOI:10.3390/plants11040496
PMID:35214830
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8880425/
Abstract

Proline-rich extensin-like receptor kinases (PERKs) are a class of receptor kinases implicated in multiple cellular processes in plants. However, there is a lack of information on the PERK gene family in wheat. Therefore, we identified 37 PERK genes in wheat to understand their role in various developmental processes and stress conditions. Phylogenetic analysis of PERK genes from , , and grouped them into eight well-defined classes. Furthermore, synteny analysis revealed 275 orthologous gene pairs in , , , and . Ka/Ks values showed that most TaPERK genes, except TaPERK1, TaPERK2, TaPERK17, and TaPERK26, underwent strong purifying selection during evolutionary processes. Several cis-acting regulatory elements, essential for plant growth and development and the response to light, phytohormones, and diverse biotic and abiotic stresses, were predicted in the promoter regions of TaPERK genes. In addition, the expression profile of the TaPERK gene family revealed differential expression of TaPERK genes in various tissues and developmental stages. Furthermore, TaPERK gene expression was induced by various biotic and abiotic stresses. The RT-qPCR analysis also revealed similar results with slight variation. Therefore, this study's outcome provides valuable information for elucidating the precise functions of TaPERK in developmental processes and diverse stress conditions in wheat.

摘要

富含脯氨酸的类伸展蛋白受体激酶(PERKs)是一类参与植物多种细胞过程的受体激酶。然而,关于小麦中的PERK基因家族的信息却很匮乏。因此,我们在小麦中鉴定出了37个PERK基因,以了解它们在各种发育过程和胁迫条件下的作用。对来自[此处可能缺失具体物种信息]、[此处可能缺失具体物种信息]、[此处可能缺失具体物种信息]和[此处可能缺失具体物种信息]的PERK基因进行系统发育分析,将它们分为八个明确的类别。此外,共线性分析揭示了在[此处可能缺失具体物种信息]、[此处可能缺失具体物种信息]、[此处可能缺失具体物种信息]和[此处可能缺失具体物种信息]中有275对直系同源基因对。Ka/Ks值表明,除TaPERK1、TaPERK2、TaPERK17和TaPERK26外,大多数TaPERK基因在进化过程中经历了强烈的纯化选择。在TaPERK基因的启动子区域预测到了几个对植物生长发育以及对光、植物激素和各种生物及非生物胁迫响应至关重要的顺式作用调控元件。此外,TaPERK基因家族的表达谱揭示了TaPERK基因在不同组织和发育阶段的差异表达。此外,TaPERK基因表达受到各种生物和非生物胁迫的诱导。RT-qPCR分析也得出了类似的结果,只是略有差异。因此,本研究的结果为阐明TaPERK在小麦发育过程和多种胁迫条件下的精确功能提供了有价值的信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/424a09dc6cc9/plants-11-00496-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/957273e6f3c2/plants-11-00496-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/58ebd2dba502/plants-11-00496-g002a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/0efd7476e3d5/plants-11-00496-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/eae8f672c1d7/plants-11-00496-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/3870ed14d01f/plants-11-00496-g005a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/bf382fb8220d/plants-11-00496-g006a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/4f2b65fcc208/plants-11-00496-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/cd00819ad7fe/plants-11-00496-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/0147f9824b75/plants-11-00496-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/424a09dc6cc9/plants-11-00496-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/957273e6f3c2/plants-11-00496-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/58ebd2dba502/plants-11-00496-g002a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/0efd7476e3d5/plants-11-00496-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/eae8f672c1d7/plants-11-00496-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/3870ed14d01f/plants-11-00496-g005a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/bf382fb8220d/plants-11-00496-g006a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/4f2b65fcc208/plants-11-00496-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/cd00819ad7fe/plants-11-00496-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/0147f9824b75/plants-11-00496-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6d8/8880425/424a09dc6cc9/plants-11-00496-g010.jpg

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