Nedashkovkaya Olga I, Kim Song-Gun, Balabanova Larissa A, Zhukova Natalia V, Son Oksana M, Tekutyeva Liudmila A, Mikhailov Valery V
G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of the Russian Academy of Sciences, Vladivostok, Russia.
Korean Collection for Type Cultures, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, South Korea.
Front Microbiol. 2022 Feb 8;12:809431. doi: 10.3389/fmicb.2021.809431. eCollection 2021.
A strictly aerobic, Gram-stain-negative, rod-shaped, and motile bacterium, designated strain 16-SW-7, isolated from a seawater sample, was investigated in detail due to its ability to produce a unique α-galactosidase converting B red blood cells into the universal type blood cells. The phylogenetic analysis based on 16S rRNA gene sequences revealed that the strain 16-SW-7 is a member of the genus . The closest relatives of the environmental isolate were KMM 638 and KMM 3548, with the plural paralogous 16S rRNA genes of 99.87-100% similarity. The strain 16-SW-7 grew with 1-10% NaCl and at 4-34°C, and hydrolyzed casein, gelatin, tyrosine, and DNA. The genomic DNA G+C content was 39.3 mol%. The prevalent fatty acids were C ω7, C, C ω8, C ω7, C, and C 3-OH. The polar lipid profile was characterized by the presence of phosphatidylethanolamine, phosphatidylglycerol, two unidentified amino lipids, and three unidentified lipids. The major respiratory quinone was Q-8. The finished genome of the strain 16-SW-7 (GenBank assembly accession number: GCA_005877035.1) has a size of 4,531,445 bp and comprises two circular chromosomes L1 and S1, deposited in the GenBank under the accession numbers CP040558 and CP040559, respectively. The strain 16-SW-7 has the ANI values of 98.2% with KMM 638 and KMM 3548 and the DDH values of 84.4 and 83.5%, respectively, indicating clearly that the three strains belonged to a single species. According to phylogenetic evidence and similarity for the chemotaxonomic and genotypic properties, the strain 16-SW-7 (= KCTC 52772 = KMM 701) represents a novel member of the species . Also, we have proposed to reclassify as a later heterotypic synonym of based on the rules of priority with the emendation of the species.
从海水样本中分离出的一株严格需氧、革兰氏染色阴性、杆状且具运动性的细菌,命名为菌株16-SW-7,因其能够产生一种独特的α-半乳糖苷酶,可将B型红细胞转化为通用型血细胞,故而对其进行了详细研究。基于16S rRNA基因序列的系统发育分析表明,菌株16-SW-7是该属的一个成员。该环境分离株的最亲近亲缘种是KMM 638和KMM 3548,其多个旁系16S rRNA基因的相似度为99.87%-100%。菌株16-SW-7在含1%-10%氯化钠的培养基中,于4-34°C条件下生长,并能水解酪蛋白、明胶、酪氨酸和DNA。基因组DNA的G+C含量为39.3 mol%。主要脂肪酸为C ω7、C、C ω8、C ω7、C和C 3-OH。极性脂质谱的特征是存在磷脂酰乙醇胺、磷脂酰甘油、两种未鉴定的氨基脂质和三种未鉴定的脂质。主要呼吸醌为Q-8。菌株16-SW-7的完整基因组(GenBank组装登录号:GCA_005877035.1)大小为4,531,445 bp,由两条环状染色体L1和S1组成,分别以登录号CP040558和CP040559保存在GenBank中。菌株16-SW-7与KMM 638和KMM 3548的ANI值分别为98.2%,DDH值分别为84.4%和83.5%,这清楚地表明这三个菌株属于同一物种。根据系统发育证据以及化学分类和基因型特征的相似性,菌株16-SW-7(= KCTC 52772 = KMM 701)代表该物种的一个新成员。此外,我们已提议根据优先权规则,对该物种进行修订后,将其重新分类为的晚出异名。