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新种河口活拟交替单胞菌,从潮滩分离得到。

Pseudoalteromonas aestuariivivens sp. nov., isolated from a tidal flat.

作者信息

Park Sooyeon, Jung Yong-Taek, Park Doo-Sang, Yoon Jung-Hoon

机构信息

Department of Food Science and Biotechnology, Sungkyunkwan University,Jangan-gu, Suwon,South Korea.

University of Science and Technology (UST),113 Gwahak-ro, Yuseong-gu, Daejeon,South Korea.

出版信息

Int J Syst Evol Microbiol. 2016 May;66(5):2078-2083. doi: 10.1099/ijsem.0.000995. Epub 2016 Feb 25.

Abstract

A Gram-stain-negative, aerobic, motile, rod-shaped or ovoid bacterial strain, designated DB-2T, was isolated from a tidal flat of the Yellow Sea in South Korea, and subjected to a taxonomic study using a polyphasic approach. Strain DB-2T grew optimally at 30 °C, at pH 7.0-8.0 and in the presence of 2.0-3.0 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences showed that strain DB-2T belonged to the genus Pseudoalteromonas. Strain DB-2T exhibited 16S rRNA gene sequence similarities of 97.17-97.36 % to the type strains of Pseudoalteromonas mariniglutinosa, Pseudoalteromonas spongiae and Pseudoalteromonas tetraodonis and of 93.79-96.99 % to the type strains of the other species of the genus Pseudoalteromonas. Strain DB-2T contained Q-8 as the predominant ubiquinone and C16 : 0, C18 : 1ω7c, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and C12 : 0 3-OH as the major fatty acids. The major polar lipids detected in strain DB-2T were phosphatidylglycerol, phosphatidylethanolamine, two unidentified glycolipids, an unidentified phospholipid and an unidentified aminolipid. The DNA G+C content of strain DB-2T was 54.9 ± 0.2 mol% and mean DNA-DNA relatedness values with the type strains of P. mariniglutinosa, P. spongiae and P. tetraodonis were 10-17 %. Differential phenotypic properties, together with phylogenetic and genetic distinctiveness, revealed that strain DB-2T is separated from recognized species of the genus Pseudoalteromonas. On the basis of these data, strain DB-2T is considered to represent a novel species of the genus Pseudoalteromonas, for which the name Pseudoalteromonas aestuariivivens sp. nov. is proposed. The type strain is DB-2T ( = KCTC 42779T = CECT 8945T).

摘要

从韩国黄海潮滩分离出一株革兰氏阴性、需氧、运动、杆状或卵形的细菌菌株,命名为DB-2T,并采用多相分类方法对其进行分类学研究。菌株DB-2T在30 °C、pH 7.0 - 8.0以及2.0 - 3.0 %(w/v)NaCl存在的条件下生长最佳。基于16S rRNA基因序列构建的系统发育树表明,菌株DB-2T属于假交替单胞菌属。菌株DB-2T与海胶假交替单胞菌、海绵假交替单胞菌和四齿鲀假交替单胞菌模式菌株的16S rRNA基因序列相似性为97.17 - 97.36 %,与假交替单胞菌属其他物种模式菌株的相似性为93.79 - 96.99 %。菌株DB-2T以Q-8作为主要泛醌,以C16 : 0、C18 : 1ω7c、总和特征3(C16 : 1ω7c和/或C16 : 1ω6c)以及C12 : 0 3-OH作为主要脂肪酸。在菌株DB-2T中检测到的主要极性脂类为磷脂酰甘油、磷脂酰乙醇胺、两种未鉴定的糖脂、一种未鉴定的磷脂和一种未鉴定的氨基脂。菌株DB-2T的DNA G+C含量为54.9 ± 0.2 mol%,与海胶假交替单胞菌、海绵假交替单胞菌和四齿鲀假交替单胞菌模式菌株的平均DNA-DNA相关性值为10 - 17 %。不同的表型特征,以及系统发育和遗传独特性,表明菌株DB-2T与假交替单胞菌属已认可的物种不同。基于这些数据,菌株DB-2T被认为代表假交替单胞菌属的一个新物种,为此提出新名称河口假交替单胞菌(Pseudoalteromonas aestuariivivens sp. nov.)。模式菌株为DB-2T( = KCTC 42779T = CECT 8945T)。

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