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整合素β亚基(ITGBs)的表达及预后综合分析:确定ITGB5为胃癌预后不良的生物标志物并与免疫浸润相关

Comprehensive Analysis of the Expression and Prognosis for ITGBs: Identification of ITGB5 as a Biomarker of Poor Prognosis and Correlated with Immune Infiltrates in Gastric Cancer.

作者信息

Liu Dongliang, Liu Shaojun, Fang Yu, Liu Liu, Hu Kongwang

机构信息

Department of General Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei, China.

Department of General Surgery, The First Hospital Affiliated to the University of Science and Technology of China, Hefei, China.

出版信息

Front Cell Dev Biol. 2022 Feb 9;9:816230. doi: 10.3389/fcell.2021.816230. eCollection 2021.

Abstract

Integrin β superfamily members (ITGBs) are documented to play important roles in various biological processes, and accumulating evidence suggests that ITGBs are associated with carcinogenic effects in several malignancies. Gastric cancer (GC) is a complicated and highly heterogeneous disease; however, the expression and prognostic values of eight ITGBs and potential mechanism in GC remain largely unclear. The expression and prognostic significance of ITGBs in GC were systematically analyzed through Gene Expression Profiling Interactive Analysis, Human Protein Atlas, Kaplan-Meier Plotter, and cBioPortal databases. Then, the mRNA transcription data and corresponding clinical data of GC were downloaded from the Gene Expression Omnibus database as a testing cohort, and differentially expressed and prognostic genes were identified. The correlation between ITGB5 expression and overall survival and various clinical parameters were found by using univariate/multivariable Cox regression and Kaplan-Meier survival analysis. Additionally, differential analysis of gene expression profiles in low- and high-ITGB5 expression groups and pathway enrichment analysis was performed. Finally, the correlation of ITGB5 expression with immune infiltrates in GC was clarified. Compared with adjacent normal tissue, the results reveal that the mRNA levels of ITGB1-2 and ITGB4-8 are significantly higher in GC, and immunohistochemistry results show the consistency between RNA and protein expression levels. Cox regression and Kaplan-Meier survival analysis indicate that high ITGB5 expression contributes to a poor prognosis and could be an independent prognostic factor in GC patients. Besides this, gene functional enrichment analysis indicates that ITGB5 expression is significantly associated with extracellular matrix organization, cell-substrate adhesion, and ossification. The KEGG pathway analysis of ITGB5 shows a close association between ITGB5 and focal adhesion, ECM-receptor interaction, phagosome, and PI3K-Akt signaling pathway. Last, the infiltrating level of CD4 T cells, macrophages, and dendritic cells are positively related to the expression of ITGB5, especially macrophages, and lower levels of macrophages predict a better prognosis in GC in our study. Our findings investigate that ITGB5 may function as a valid biomarker of prognosis, and high expression of ITGB5 predicts poor prognosis for patients with GC. Besides this, it might be a potential target of precision therapy against GC.

摘要

整合素β超家族成员(ITGBs)在各种生物学过程中发挥重要作用,越来越多的证据表明,ITGBs在多种恶性肿瘤中与致癌作用相关。胃癌(GC)是一种复杂且高度异质性的疾病;然而,8种ITGBs在GC中的表达、预后价值及潜在机制仍不清楚。通过基因表达谱交互分析、人类蛋白质图谱、Kaplan-Meier Plotter和cBioPortal数据库系统分析了ITGBs在GC中的表达及预后意义。然后,从基因表达综合数据库下载GC的mRNA转录数据及相应临床数据作为测试队列,鉴定差异表达基因和预后基因。采用单因素/多因素Cox回归和Kaplan-Meier生存分析发现ITGB5表达与总生存期及各种临床参数之间的相关性。此外,对低ITGB5表达组和高ITGB5表达组进行基因表达谱差异分析和通路富集分析。最后,阐明ITGB5表达与GC中免疫浸润的相关性。与癌旁正常组织相比,结果显示GC中ITGB1-2和ITGB4-8的mRNA水平显著更高,免疫组化结果显示RNA和蛋白质表达水平一致。Cox回归和Kaplan-Meier生存分析表明,高ITGB5表达导致预后不良,可能是GC患者的独立预后因素。除此之外,基因功能富集分析表明ITGB5表达与细胞外基质组织、细胞-基质粘附和骨化显著相关。ITGB5的KEGG通路分析显示ITGB5与粘着斑、ECM-受体相互作用、吞噬体和PI3K-Akt信号通路密切相关。最后,CD4 T细胞、巨噬细胞和树突状细胞的浸润水平与ITGB5表达呈正相关,尤其是巨噬细胞,在我们的研究中,巨噬细胞水平较低预示GC患者预后较好。我们的研究结果表明,ITGB5可能作为一个有效的预后生物标志物,ITGB5高表达预示GC患者预后不良。除此之外,它可能是GC精准治疗的潜在靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82b9/8863963/da34a22a1242/fcell-09-816230-g001.jpg

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