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sp. nov.,一种从中国内蒙古自治区苏打湖分离出的嗜盐嗜碱菌。

sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China.

机构信息

State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, 100101, Beijing, PR China.

Sichuan Normal University, Sichuan 610101, PR China.

出版信息

Int J Syst Evol Microbiol. 2022 Mar;72(3). doi: 10.1099/ijsem.0.005263.

Abstract

A haloalkaliphilic strain (IM 1326) was isolated from brine sampled at a soda lake in the Inner Mongolia Autonomous Region, China. Cells of the strain were rod-shaped and motile. Strain IM 1326 was able to grow at 4-42 °C (optimum, 37 °C) with 0-13.0 % (w/v) NaCl concentrations (optimum at 4.0-6.0 %) and at pH 7.5-11.0 (optimum at 9.0-10.0). The 16S rRNA gene phylogenetic analysis revealed that the isolate belongs to the genus and is closely related to the type strains of (95.8 % sequence similarity), (95.7 %), (95.4 %) and (95.3 %). The whole genome of strain IM 1326 was sequenced, and the genomic DNA G+C content was 49.7 mol%. Average nucleotide identity, average amino acid identity and digital DNA-DNA hybridization values between the isolate and the related species were 68.1-84.9 %, 76-78 % and 18.4-20.4 %, respectively. The respiratory quinone was ubiquinone-8. The polar lipid profile included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and one unidentified aminophospholipid. The predominant cellular fatty acids were summed feature 9 (10-methyl-C/iso-C  9, 22.2 %), iso-C (16.1 %) and iso-C (13.1 %). Based on the results of phylogenetic analysis, genome relatedness, and the physiological and chemotaxonomic properties of the isolate, strain IM 1326 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed (type strain IM 1326=CGMCC 1.17056=JCM 34227).

摘要

一株嗜碱盐菌(IM 1326)从中国内蒙古自治区的苏打湖中分离得到。细胞呈杆状且可运动。菌株 IM 1326 能在 4-42°C(最适温度 37°C)、0-13.0%(w/v)NaCl 浓度(最适 4.0-6.0%)和 pH7.5-11.0(最适 9.0-10.0)的条件下生长。16S rRNA 基因系统发育分析表明,该分离株属于 属,与模式菌株 (95.8%序列相似性)、 (95.7%)、 (95.4%)和 (95.3%)密切相关。对菌株 IM 1326 的全基因组进行测序,基因组 DNA G+C 含量为 49.7mol%。与相关 种的平均核苷酸同一性、平均氨基酸同一性和数字 DNA-DNA 杂交值分别为 68.1-84.9%、76-78%和 18.4-20.4%。呼吸醌为泛醌-8。极性脂谱包括双磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺和一种未鉴定的氨基磷脂。主要的细胞脂肪酸为 sum feature 9(10-甲基-C/iso-C9,22.2%)、iso-C(16.1%)和 iso-C(13.1%)。基于系统发育分析、基因组相关性以及分离株的生理和化学分类学特性,菌株 IM 1326 被认为代表了属的一个新种,提议命名为 sp. nov.(模式菌株 IM 1326=CGMCC 1.17056=JCM 34227)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5f8/9558577/7726fc714729/ijsem-72-5263-g001.jpg

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