Suppr超能文献

核心基序预测组合门限线性网络中的动态吸引子。

Core motifs predict dynamic attractors in combinatorial threshold-linear networks.

机构信息

Mathematics Department, Keene State College, Keene, NH, United States of America.

Department of Mathematics, University of North Carolina at Chapel Hill, State College, PA, United States of America.

出版信息

PLoS One. 2022 Mar 4;17(3):e0264456. doi: 10.1371/journal.pone.0264456. eCollection 2022.

Abstract

Combinatorial threshold-linear networks (CTLNs) are a special class of inhibition-dominated TLNs defined from directed graphs. Like more general TLNs, they display a wide variety of nonlinear dynamics including multistability, limit cycles, quasiperiodic attractors, and chaos. In prior work, we have developed a detailed mathematical theory relating stable and unstable fixed points of CTLNs to graph-theoretic properties of the underlying network. Here we find that a special type of fixed points, corresponding to core motifs, are predictive of both static and dynamic attractors. Moreover, the attractors can be found by choosing initial conditions that are small perturbations of these fixed points. This motivates us to hypothesize that dynamic attractors of a network correspond to unstable fixed points supported on core motifs. We tested this hypothesis on a large family of directed graphs of size n = 5, and found remarkable agreement. Furthermore, we discovered that core motifs with similar embeddings give rise to nearly identical attractors. This allowed us to classify attractors based on structurally-defined graph families. Our results suggest that graphical properties of the connectivity can be used to predict a network's complex repertoire of nonlinear dynamics.

摘要

组合门限线性网络(CTLNs)是一类特殊的抑制主导 TLNs,由有向图定义。与更一般的 TLNs 一样,它们表现出多种非线性动力学,包括多稳定性、极限环、准周期吸引子和混沌。在之前的工作中,我们已经开发了一种详细的数学理论,将 CTLNs 的稳定和不稳定固定点与底层网络的图论性质联系起来。在这里,我们发现一种特殊类型的固定点,对应于核心基序,可预测静态和动态吸引子。此外,可以通过选择这些固定点的小扰动初始条件来找到吸引子。这促使我们假设网络的动态吸引子对应于核心基序上支持的不稳定固定点。我们在大小为 n=5 的一大类有向图上对该假设进行了测试,发现了非常好的一致性。此外,我们发现具有相似嵌入的核心基序会产生几乎相同的吸引子。这使我们能够根据结构定义的图族对吸引子进行分类。我们的结果表明,连接的图形属性可用于预测网络复杂的非线性动力学范围。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e90a/8896682/03af92f0e03c/pone.0264456.g001.jpg

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验