Suppr超能文献

疾病中的多尺度建模。

Multiscale modeling in disease.

作者信息

Ford Versypt Ashlee N

机构信息

Department of Chemical and Biological Engineering and Institute for Computational and Data Sciences, University at Buffalo, The State University of New York, Buffalo, NY, USA.

出版信息

Curr Opin Syst Biol. 2021 Sep;27. doi: 10.1016/j.coisb.2021.05.001. Epub 2021 May 8.

Abstract

Multiscale computational modeling aims to connect the complex networks of effects at different length and/or time scales. For example, these networks often include intracellular molecular signaling, crosstalk, and other interactions between neighboring cell populations, and higher levels of emergent phenomena across different regions of tissues and among collections of tissues or organs interacting with each other in the whole body. Recent applications of multiscale modeling across intracellular, cellular, and/or tissue levels are highlighted here. These models incorporated the roles of biochemical and biomechanical modulation in processes that are implicated in the mechanisms of several diseases including fibrosis, joint and bone diseases, respiratory infectious diseases, and cancers.

摘要

多尺度计算建模旨在连接不同长度和/或时间尺度上的复杂效应网络。例如,这些网络通常包括细胞内分子信号传导、串扰以及相邻细胞群体之间的其他相互作用,以及跨组织不同区域、在全身相互作用的组织或器官集合之间出现的更高层次的现象。本文重点介绍了多尺度建模在细胞内、细胞和/或组织水平上的最新应用。这些模型纳入了生化和生物力学调节在多种疾病机制中所涉及过程中的作用,这些疾病包括纤维化、关节和骨骼疾病、呼吸道传染病以及癌症。

相似文献

1
Multiscale modeling in disease.
Curr Opin Syst Biol. 2021 Sep;27. doi: 10.1016/j.coisb.2021.05.001. Epub 2021 May 8.
2
Multiscale Computational Modeling of Vascular Adaptation: A Systems Biology Approach Using Agent-Based Models.
Front Bioeng Biotechnol. 2021 Nov 2;9:744560. doi: 10.3389/fbioe.2021.744560. eCollection 2021.
4
On modeling the multiscale mechanobiology of soft tissues: Challenges and progress.
Biophys Rev (Melville). 2022 Aug 15;3(3):031303. doi: 10.1063/5.0085025. eCollection 2022 Sep.
5
Multiscale Modeling of Bone Healing: Toward a Systems Biology Approach.
Front Physiol. 2017 May 8;8:287. doi: 10.3389/fphys.2017.00287. eCollection 2017.
6
Simulating cancer growth with multiscale agent-based modeling.
Semin Cancer Biol. 2015 Feb;30:70-8. doi: 10.1016/j.semcancer.2014.04.001. Epub 2014 May 2.
7
Multiscale models of breast cancer progression.
Ann Biomed Eng. 2012 Nov;40(11):2488-500. doi: 10.1007/s10439-012-0655-8. Epub 2012 Sep 25.
8
Multiscale modeling of mucosal immune responses.
BMC Bioinformatics. 2015;16 Suppl 12(Suppl 12):S2. doi: 10.1186/1471-2105-16-S12-S2. Epub 2015 Aug 25.
9
A multiscale analytical approach for bone remodeling simulations: linking scales from collagen to trabeculae.
Bone. 2014 Jul;64:303-13. doi: 10.1016/j.bone.2014.03.050. Epub 2014 Apr 5.

引用本文的文献

1
Logic-based modeling of inflammatory macrophage cross talk with glomerular endothelial cells in diabetic kidney disease.
Am J Physiol Renal Physiol. 2025 Jul 1;329(1):F202-F224. doi: 10.1152/ajprenal.00362.2024. Epub 2025 May 26.
2
Analysis of systemic effects of dioxin on human health through template-and-anchor modeling.
PLoS Comput Biol. 2025 Mar 27;21(3):e1012840. doi: 10.1371/journal.pcbi.1012840. eCollection 2025 Mar.
3
A review of mathematical modeling of bone remodeling from a systems biology perspective.
Front Syst Biol. 2024;4. doi: 10.3389/fsysb.2024.1368555. Epub 2024 Apr 8.
4
Multiscale computational model predicts how environmental changes and treatments affect microvascular remodeling in fibrotic disease.
PNAS Nexus. 2024 Dec 7;4(1):pgae551. doi: 10.1093/pnasnexus/pgae551. eCollection 2025 Jan.
5
Building multiscale models with PhysiBoSS, an agent-based modeling tool.
Brief Bioinform. 2024 Sep 23;25(6). doi: 10.1093/bib/bbae509.
6
A rule-based multiscale model of hepatic stellate cell plasticity: Critical role of the inactivation loop in fibrosis progression.
PLoS Comput Biol. 2024 Jul 29;20(7):e1011858. doi: 10.1371/journal.pcbi.1011858. eCollection 2024 Jul.
7
Mathematical Modeling Support for Lung Cancer Therapy-A Short Review.
Int J Mol Sci. 2023 Sep 25;24(19):14516. doi: 10.3390/ijms241914516.

本文引用的文献

1
Mathematical Modeling of Tuberculosis Granuloma Activation.
Processes (Basel). 2017 Dec;5(4). doi: 10.3390/pr5040079. Epub 2017 Dec 11.
2
Multiscale modeling meets machine learning: What can we learn?
Arch Comput Methods Eng. 2021 May;28(3):1017-1037. doi: 10.1007/s11831-020-09405-5. Epub 2020 Feb 17.
3
From Transcript to Tissue: Multiscale Modeling from Cell Signaling to Matrix Remodeling.
Ann Biomed Eng. 2021 Jul;49(7):1701-1715. doi: 10.1007/s10439-020-02713-8. Epub 2021 Jan 7.
6
Directionality of Macrophages Movement in Tumour Invasion: A Multiscale Moving-Boundary Approach.
Bull Math Biol. 2020 Nov 19;82(12):148. doi: 10.1007/s11538-020-00819-7.
7
A multiscale model of cardiac concentric hypertrophy incorporating both mechanical and hormonal drivers of growth.
Biomech Model Mechanobiol. 2021 Feb;20(1):293-307. doi: 10.1007/s10237-020-01385-6. Epub 2020 Sep 24.
8
Global sensitivity analysis of biological multi-scale models.
Curr Opin Biomed Eng. 2019 Sep;11:109-116. doi: 10.1016/j.cobme.2019.09.012. Epub 2019 Oct 15.
9
Modeling heterogeneous tumor growth dynamics and cell-cell interactions at single-cell and cell-population resolution.
Curr Opin Syst Biol. 2019 Oct;17:24-34. doi: 10.1016/j.coisb.2019.09.005. Epub 2019 Sep 16.
10
Agent-Based Models Predict Emergent Behavior of Heterogeneous Cell Populations in Dynamic Microenvironments.
Front Bioeng Biotechnol. 2020 Jun 11;8:249. doi: 10.3389/fbioe.2020.00249. eCollection 2020.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验