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基于免疫和缺氧信号综合分析的LUAD预后预测模型的多组学特征识别

Multi-Omics Signatures Identification for LUAD Prognosis Prediction Model Based on the Integrative Analysis of Immune and Hypoxia Signals.

作者信息

Lou Yuqing, Shi Qin, Zhang Yanwei, Qi Ying, Zhang Wei, Wang Huimin, Lu Jun, Han Baohui, Zhong Hua

机构信息

Department of Pulmonary Medicine, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai, China.

Department of Oncology, Baoshan Branch of Shuguang Hospital, Shanghai University of Traditional Chinese Medicine, Shanghai, China.

出版信息

Front Cell Dev Biol. 2022 Mar 10;10:840466. doi: 10.3389/fcell.2022.840466. eCollection 2022.

Abstract

Lung adenocarcinoma (LUAD) is the most common histological subtype of lung cancer with heterogeneous outcomes and diverse therapeutic responses. However, the understanding of the potential mechanism behind LUAD initiation and progression remains limited. Increasing evidence shows the clinical significance of the interaction between immune and hypoxia in tumor microenvironment. To mine reliable prognostic signatures related to both immune and hypoxia and provide a more comprehensive landscape of the hypoxia-immune genome map, we investigated the hypoxia-immune-related alteration at the multi-omics level (gene expression, somatic mutation, and DNA methylation). Multiple strategies including lasso regression and multivariate Cox proportional hazards regression were used to screen the signatures with clinical significance and establish an incorporated prognosis prediction model with robust discriminative power on survival status on both the training and test datasets. Finally, combing all the samples, we constructed a robust model comprising 19 signatures for the prognosis prediction of LUAD patients. The results of our study provide a comprehensive landscape of hypoxia-immune related genetic alterations and provide a robust prognosis predictor for LUAD patients.

摘要

肺腺癌(LUAD)是肺癌最常见的组织学亚型,其预后异质性强,治疗反应多样。然而,对LUAD发生发展背后潜在机制的理解仍然有限。越来越多的证据表明肿瘤微环境中免疫与缺氧相互作用的临床意义。为了挖掘与免疫和缺氧相关的可靠预后特征,并提供更全面的缺氧-免疫基因组图谱,我们在多组学水平(基因表达、体细胞突变和DNA甲基化)研究了缺氧-免疫相关改变。使用包括套索回归和多变量Cox比例风险回归在内的多种策略筛选具有临床意义的特征,并建立一个在训练集和测试集上对生存状态具有强大判别力的综合预后预测模型。最后,综合所有样本,我们构建了一个由19个特征组成的强大模型用于LUAD患者的预后预测。我们的研究结果提供了缺氧-免疫相关基因改变的全面图谱,并为LUAD患者提供了一个强大的预后预测指标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/8960258/1c6b43b5d8a4/fcell-10-840466-g001.jpg

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