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对粘质阿克曼菌抗生素耐药性的基因组分析

Genomic Insights into Achromobacter mucicolens Antibiotic Resistance.

机构信息

Health and Medical Technology College Baghdad, Middle Technical University, Baghdad, Iraq.

Iraqi Ministry of Higher Education and Scientific Research, Deputy of Scholarships and Cultural Relationship, Baghdad, Iraq.

出版信息

Microbiol Spectr. 2022 Apr 27;10(2):e0191621. doi: 10.1128/spectrum.01916-21. Epub 2022 Apr 4.

Abstract

Achromobacter denitrificans is an environmental opportunistic pathogen that is infecting a large number of immunocompromised patients. A more recently identified strain from the historical collection of strains of Achromobacter denitrificans is Achromobacter mucicolens. In hosts with a variety of underlying diseases, spp. can induce a wide spectrum of disorders. Because of the bacterium's intrinsic genetic constitution and resistance gained over time, antibiotics are challenged to handle Due to the fact that is rare and its taxonomy is not completely understood, it is difficult to define clinical symptoms, acquisition risk factors, and thus the best therapeutic course of action. To help comprehend this intrinsic and acquired resistance, we analyzed the entire genome of the strain and utilized bioinformatics methods to estimate the strain's probable drug resistance profile. In our study, we have isolated and cultured a clinically important strain and subjected it to antimicrobial susceptibility tests against antibiotics in the Vitek 2 testing system. The strain's genome sequence as well as an investigation of 27 of its phenotypic traits provides important information regarding this pathogen. The genome of this strain possesses a number of antibiotic resistance genes that code for efflux pump systems and other antibiotic-regulating as well as -modifying enzymes. Our research analysis predicted genes involved in drug resistance, including genes for efflux pump systems, antibiotic efflux, antibiotic inactivation, and antibiotic target alteration. studies validated the genomic evidence for its ability to exhibit resistance against a wide range of antibiotics. Our investigation paves the way for more research on understanding the functioning of the key discovered genes that contribute toward the pathogenicity of and hence gives new information and treatment options for this emerging pathogen. species are well-known opportunistic human pathogens that can be found in water and soil and most commonly in hospital settings. They thrive in immunocompromised individuals, producing sporadic cases of pneumonia, septicemia, peritonitis, urinary tract infections, and other illnesses. strains are inherently resistant to a wide spectrum of antibiotics, making them difficult to treat promptly. The strain under study, , was notably resistant to various antibiotics, and the infection could be controlled only after several rounds of prescription medications at different doses. This consumed a lot of time and put the already immunosuppressed leukemic patient through a great ordeal. The study aimed to raise awareness about the importance of the bacterium's lethality, and doctors should evaluate the bacterium's potential for resistance before prescribing antibiotics. Sanitation and other precautions should also be implemented in hospitals and other public places.

摘要

不动杆菌属是一种环境机会性病原体,感染大量免疫功能低下的患者。最近从不动杆菌属的历史菌株库中分离出的一种菌株是粘质沙雷氏菌。在患有各种基础疾病的宿主中, spp. 可引起广泛的疾病。由于细菌的固有遗传构成和随着时间的推移获得的耐药性,抗生素在处理 方面面临挑战。由于 比较罕见,其分类学尚未完全了解,因此难以确定临床症状、获取风险因素,以及最佳的治疗方案。为了帮助理解这种内在和获得的耐药性,我们分析了该菌株的全基因组,并利用生物信息学方法来估计该菌株可能的药物耐药谱。在我们的研究中,我们分离并培养了一株临床上重要的 菌株,并对其进行了抗生素敏感性测试,使用的是 Vitek 2 测试系统。该菌株的基因组序列以及对其 27 种表型特征的研究为该病原体提供了重要信息。该 菌株的基因组含有许多编码外排泵系统以及其他抗生素调节和修饰酶的抗生素耐药基因。我们的研究分析预测了与耐药性相关的基因,包括外排泵系统、抗生素外排、抗生素失活和抗生素靶标改变的基因。 研究验证了其对多种抗生素表现出耐药性的基因组证据。我们的研究为进一步研究理解导致 致病的关键发现基因的功能铺平了道路,从而为这种新兴病原体提供了新的信息和治疗选择。 种是众所周知的机会性人类病原体,可在水和土壤中以及大多数医院环境中找到。它们在免疫功能低下的个体中茁壮成长,导致散发性肺炎、败血症、腹膜炎、尿路感染和其他疾病。 菌株对广谱抗生素固有耐药,使其难以迅速治疗。所研究的菌株 表现出对各种抗生素的显著耐药性,只有在不同剂量的几轮处方药物治疗后才能控制感染。这耗费了大量时间,并使已经免疫抑制的白血病患者经历了巨大的痛苦。该研究旨在提高人们对 细菌致命性的认识,医生在开抗生素之前应评估细菌的耐药潜力。还应在医院和其他公共场所实施卫生和其他预防措施。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b96/9045304/b7e901105488/spectrum.01916-21-f001.jpg

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