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泛素化修饰在植物生长发育、胁迫响应和激素信号转导等过程中发挥着重要作用。

Genome-Wide Identification and Expression Analysis of the Basic Leucine Zipper (bZIP) Transcription Factor Gene Family in .

机构信息

Key Laboratory of Agro-Products Quality and Safety Control in Storage and Transport Process, Ministry of Agriculture and Rural Affairs/Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing 100193, China.

Genomics Lab, School of Food and Agricultural Sciences (SFAS), University of Management and Technology (UMT), Johar Town, Lahore 54782, Pakistan.

出版信息

Genes (Basel). 2022 Mar 28;13(4):607. doi: 10.3390/genes13040607.

Abstract

The basic leucine zipper (bZIP) is a widely found transcription factor family that plays regulatory roles in a variety of cellular processes including cell growth and development and various stress responses. However, the bZIP gene family has not been well studied at a genome-wide scale in , a potent pathogen of cereal grains. In the present study, we conducted a genome-wide identification, characterization, and expression profiling of 22 bZIP () genes at different developmental stages and under various abiotic stresses. All identified were categorized into nine groups based on their sequence similarity and phylogenetic tree analysis. Furthermore, the gene structure analysis, conserved motif analysis, chromosomal localization, protein network studies, and synteny analysis were performed. The symmetry of the exon and intron varied with the phylogenetic groups. The post-translational modifications (PTMs) analysis also predicted several phosphorylation sites in FgbZIPs, indicating their functional diversity in cellular processes. The evolutionary study identified many orthogroups among eight species and also predicted several gene duplication events in . The protein modeling indicated the presence of a higher number of α-helices and random coils in their structures. The expression patterns of genes showed that 5 genes, including , , and , had high expression at different growth and conidiogenesis stages. Similarly, eight genes including , , , , , , and demonstrated their putative role in response to various abiotic stresses. In summary, these results provided basic information regarding FgbZIPs which are helpful for further functional analysis.

摘要

碱性亮氨酸拉链(bZIP)是一个广泛存在的转录因子家族,在细胞生长和发育以及各种应激反应等多种细胞过程中发挥调节作用。然而,在 ,一种谷物的强效病原体,bZIP 基因家族在全基因组范围内的研究还不够深入。在本研究中,我们对 22 个 bZIP()基因在不同发育阶段和各种非生物胁迫下的全基因组进行了鉴定、特征描述和表达谱分析。所有鉴定的 都根据它们的序列相似性和系统发育树分析分为九个组。此外,还进行了基因结构分析、保守基序分析、染色体定位、蛋白质网络研究和同线性分析。外显子和内含子的对称性随系统发育群而变化。翻译后修饰(PTMs)分析还预测了 FgbZIPs 中的几个磷酸化位点,表明它们在细胞过程中的功能多样性。进化研究在八个物种中鉴定了许多直系同源物,并预测了 中的几个基因复制事件。蛋白质建模表明它们的结构中存在更多的α-螺旋和无规则卷曲。基因表达模式表明,包括 、 、 、 在内的 5 个基因在不同的生长和分生孢子发生阶段具有高表达。同样,包括 、 、 、 、 、 和 在内的 8 个基因也表明它们在响应各种非生物胁迫方面具有潜在作用。总之,这些结果提供了有关 FgbZIPs 的基本信息,有助于进一步的功能分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed90/9028111/c591ff6f40a4/genes-13-00607-g001.jpg

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