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包含祖先信息的犬类基因组学挑战了流行的品种刻板印象。

Ancestry-inclusive dog genomics challenges popular breed stereotypes.

机构信息

Bioinformatics and Integrative Biology, University of Massachusetts Chan Medical School, Worcester, MA 01655, USA.

Morningside Graduate School of Biomedical Sciences, University of Massachusetts Chan Medical School, Worcester, MA 01655, USA.

出版信息

Science. 2022 Apr 29;376(6592):eabk0639. doi: 10.1126/science.abk0639.

DOI:10.1126/science.abk0639
PMID:35482869
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9675396/
Abstract

Behavioral genetics in dogs has focused on modern breeds, which are isolated subgroups with distinctive physical and, purportedly, behavioral characteristics. We interrogated breed stereotypes by surveying owners of 18,385 purebred and mixed-breed dogs and genotyping 2155 dogs. Most behavioral traits are heritable [heritability () > 25%], and admixture patterns in mixed-breed dogs reveal breed propensities. Breed explains just 9% of behavioral variation in individuals. Genome-wide association analyses identify 11 loci that are significantly associated with behavior, and characteristic breed behaviors exhibit genetic complexity. Behavioral loci are not unusually differentiated in breeds, but breed propensities align, albeit weakly, with ancestral function. We propose that behaviors perceived as characteristic of modern breeds derive from thousands of years of polygenic adaptation that predates breed formation, with modern breeds distinguished primarily by aesthetic traits.

摘要

犬类行为遗传学主要集中在现代品种上,这些品种是具有独特身体特征和据称具有独特行为特征的隔离亚群。我们通过调查 18385 只纯种犬和混种犬的主人并对 2155 只犬进行基因分型来探究品种刻板印象。大多数行为特征是可遗传的[遗传力(heritability)()>25%],而混种犬的混合模式揭示了品种倾向。品种仅能解释个体行为变异的 9%。全基因组关联分析确定了 11 个与行为显著相关的基因座,并且特征性的品种行为表现出遗传复杂性。行为基因座在品种中并没有异常分化,但品种倾向与祖先功能一致,尽管很微弱。我们提出,被认为是现代品种特征的行为源自于几千年前的多基因适应,这种适应早于品种形成,现代品种主要以审美特征区分。

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Best practices for analyzing imputed genotypes from low-pass sequencing in dogs.用于分析犬低深度测序中导入基因型的最佳实践。
Mamm Genome. 2022 Mar;33(1):213-229. doi: 10.1007/s00335-021-09914-z. Epub 2021 Sep 8.
2
Five genetic variants explain over 70% of hair coat pheomelanin intensity variation in purebred and mixed breed domestic dogs.五种遗传变异解释了超过 70%的纯种和混血家犬毛色中真黑色素强度的变异。
PLoS One. 2021 May 27;16(5):e0250579. doi: 10.1371/journal.pone.0250579. eCollection 2021.
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Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.全基因组关联研究血清代谢物在非裔美国人肾脏病和高血压研究。
Kidney Int. 2021 Aug;100(2):430-439. doi: 10.1016/j.kint.2021.03.026. Epub 2021 Apr 8.
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Low-coverage sequencing cost-effectively detects known and novel variation in underrepresented populations.低覆盖度测序能有效地检测到代表性不足的人群中的已知和新的变异。
Am J Hum Genet. 2021 Apr 1;108(4):656-668. doi: 10.1016/j.ajhg.2021.03.012. Epub 2021 Mar 25.
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Comparing low-pass sequencing and genotyping for trait mapping in pharmacogenetics.比较低通量测序和基因分型用于药物遗传学中的性状定位
BMC Genomics. 2021 Mar 20;22(1):197. doi: 10.1186/s12864-021-07508-2.
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