Ma Kai, Xu Ruiqiang, Zhao Yu, Han Liqun, Xu Yuhui, Li Lili, Wang Juan, Li Ning
Institute of Horticultural Crops, Xinjiang Academy of Agricultural Sciences, Urumqi, China.
Key Laboratory of Horticulture Crop Genomics and Genetic Improvement in Xinjiang, Urumqi, China.
Front Plant Sci. 2022 Apr 15;13:861043. doi: 10.3389/fpls.2022.861043. eCollection 2022.
Melatonin widely mediates multiple developmental dynamics in plants as a vital growth stimulator, stress protector, and developmental regulator. -acetylserotonin methyltransferase (ASMT) is the key enzyme that catalyzes the final step of melatonin biosynthesis in plants and plays an essential role in the plant melatonin regulatory network. Studies of ASMT have contributed to understanding the mechanism of melatonin biosynthesis in plants. However, gene is currently uncharacterized in most plants. In this study, we characterized the gene family using bioinformatics in a melatonin-rich plant, walnut. Phylogenetic, gene structure, conserved motifs, promoter elements, interacting proteins and miRNA analyses were also performed. The expansion and differentiation of the ASMT family occurred before the onset of the plant terrestrialization. genes were more differentiated in dicotyledonous plants. Forty-six genes were distributed in clusters on 10 chromosomes of walnut. Four genes had homologous relationships both within walnut and between species. -regulatory elements showed that was mainly induced by light and hormones, and targeted cleavage of miRNA172 and miR399 may be an important pathway to suppress expression. Transcriptome data showed that 13 were differentially expressed at different periods of walnut bud development. WGCNA showed that were coexpressed with genes regulating cell fate and epigenetic modifications during early physiological differentiation of walnut female flower buds. were highly expressed during morphological differentiation of flower buds, associated with altered stress capacity of walnut flower buds, and predicted to be involved in the regulatory network of abscisic acid, salicylic acid, and cytokinin in walnut. The qRT-PCR validated the results of differential expression analysis and further provided three genes with different expression profiles in walnut flower bud development. Our study explored the evolutionary relationships of the plant gene family and the functional characteristics of walnut . It provides a valuable perspective for further understanding the complex melatonin mechanisms in plant developmental regulation.
褪黑素作为一种重要的生长刺激剂、胁迫保护剂和发育调节剂,广泛介导植物中的多种发育动态。N - 乙酰血清素甲基转移酶(ASMT)是催化植物褪黑素生物合成最后一步的关键酶,在植物褪黑素调控网络中起重要作用。对ASMT的研究有助于理解植物褪黑素生物合成的机制。然而,目前该基因在大多数植物中尚未得到表征。在本研究中,我们利用生物信息学对富含褪黑素的植物核桃中的ASMT基因家族进行了表征。还进行了系统发育、基因结构、保守基序、启动子元件、相互作用蛋白和miRNA分析。ASMT家族的扩张和分化发生在植物陆地化开始之前。该基因在双子叶植物中分化程度更高。46个ASMT基因分布在核桃的10条染色体上成簇分布。四个ASMT基因在核桃内部以及种间都存在同源关系。启动子调控元件显示,ASMT主要受光和激素诱导,miRNA172和miR399的靶向切割可能是抑制ASMT表达的重要途径。转录组数据显示,13个ASMT基因在核桃芽发育的不同时期差异表达。加权基因共表达网络分析(WGCNA)表明,在核桃雌花早期生理分化过程中,ASMT基因与调控细胞命运和表观遗传修饰的基因共表达。在花芽形态分化过程中ASMT基因高度表达,与核桃花芽胁迫能力的改变有关,并预测参与核桃中脱落酸、水杨酸和细胞分裂素的调控网络。实时荧光定量PCR(qRT - PCR)验证了差异表达分析的结果,并进一步提供了三个在核桃花芽发育中具有不同表达谱的ASMT基因。我们的研究探索了植物ASMT基因家族的进化关系以及核桃ASMT基因的功能特性。它为进一步理解植物发育调控中复杂的褪黑素机制提供了有价值的视角。