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果树代谢组学的研究进展与趋势

Research Progress and Trends in Metabolomics of Fruit Trees.

作者信息

Li Jing, Yan Guohua, Duan Xuwei, Zhang Kaichun, Zhang Xiaoming, Zhou Yu, Wu Chuanbao, Zhang Xin, Tan Shengnan, Hua Xin, Wang Jing

机构信息

Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, Northeast Forestry University, Harbin, China.

Institute of Forestry and Pomology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.

出版信息

Front Plant Sci. 2022 Apr 29;13:881856. doi: 10.3389/fpls.2022.881856. eCollection 2022.

Abstract

Metabolomics is an indispensable part of modern systems biotechnology, applied in the diseases' diagnosis, pharmacological mechanism, and quality monitoring of crops, vegetables, fruits, etc. Metabolomics of fruit trees has developed rapidly in recent years, and many important research results have been achieved in combination with transcriptomics, genomics, proteomics, quantitative trait locus (QTL), and genome-wide association study (GWAS). These research results mainly focus on the mechanism of fruit quality formation, metabolite markers of special quality or physiological period, the mechanism of fruit tree's response to biotic/abiotic stress and environment, and the genetics mechanism of fruit trait. According to different experimental purposes, different metabolomic strategies could be selected, such as targeted metabolomics, non-targeted metabolomics, pseudo-targeted metabolomics, and widely targeted metabolomics. This article presents metabolomics strategies, key techniques in metabolomics, main applications in fruit trees, and prospects for the future. With the improvement of instruments, analysis platforms, and metabolite databases and decrease in the cost of the experiment, metabolomics will prompt the fruit tree research to achieve more breakthrough results.

摘要

代谢组学是现代系统生物技术不可或缺的一部分,应用于疾病诊断、药理机制以及农作物、蔬菜、水果等的品质监测。近年来,果树代谢组学发展迅速,在与转录组学、基因组学、蛋白质组学、数量性状基因座(QTL)和全基因组关联研究(GWAS)相结合方面取得了许多重要研究成果。这些研究成果主要集中在果实品质形成机制、特殊品质或生理时期的代谢物标记、果树对生物/非生物胁迫及环境的响应机制以及果实性状的遗传机制等方面。根据不同的实验目的,可以选择不同的代谢组学策略,如靶向代谢组学、非靶向代谢组学、伪靶向代谢组学和广泛靶向代谢组学。本文介绍了代谢组学策略、代谢组学中的关键技术、在果树中的主要应用以及未来展望。随着仪器、分析平台和代谢物数据库的不断完善以及实验成本的降低,代谢组学将促使果树研究取得更多突破性成果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/649c/9106391/8f01140dd499/fpls-13-881856-g001.jpg

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