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Thauera sedimentorum sp. nov.,从沿海沉积物中分离得到。

Thauera sedimentorum sp. nov., Isolated from Coastal Sediment.

机构信息

Department of Microbiology, Chung-Ang University College of Medicine, Seoul, 06974, Republic of Korea.

Department of Food Science and Biotechnology, Sungkyunkwan University, Suwon, 16419, Republic of Korea.

出版信息

Curr Microbiol. 2022 May 20;79(7):201. doi: 10.1007/s00284-022-02890-w.

DOI:10.1007/s00284-022-02890-w
PMID:35596013
Abstract

A Gram-negative, strictly aerobic, rod-shaped, non-spore-forming bacterium, designated CAU 1555, was isolated from a sediment sample collected on Jeju Island, Republic of Korea. Growth of the isolate was observed at 20-37 °C (optimum at 30 °C) and pH 5.5-10.0 (optimum at 8.0). Phylogenetic analysis based on the result of 16S rRNA gene sequences revealed that strain CAU 1555 belonged to the genus Thauera and was closely related to Thauera hydrothermalis GD-2 (98.4% sequence similarity), Thauera lacus D20 (96.6%), and Thauera linaloolentis 47Lol (95.5%). Strain CAU 1555 possessed phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine, one unidentified phospholipid, and one aminophospholipid as the major polar lipids; Q-8 as the predominant respiratory quinone; and C, summed feature 3 (comprising C1 and/or C), and summed feature 8 (comprising C/ C) as the major fatty acids. The average nucleotide identity (ANI), average amino acid identity (AAI), and digital DNA-DNA hybridization (dDDH) values between the new isolate and T. hydrothermalis GD-2 were 84.5%, 86.4%, and 28.0%, respectively. Whole-genome sequencing of strain CAU 1555 revealed 3,955,289 bp with a DNA G + C content of 68.0 mol%. Based on the results of its polyphasic properties and genomic analysis, the isolate represents a novel species within the genus Thauera, for which the name Thauera sedimentorum sp. nov. is proposed, with CAU 1555 (= KCTC 72546 = MCCC 1K04065) as the type strain.

摘要

一株革兰氏阴性、严格需氧、杆状、不产芽孢的细菌,被命名为 CAU 1555,从韩国济州岛的一个沉积物样本中分离得到。该分离株的生长温度为 20-37°C(最佳温度为 30°C),pH 值为 5.5-10.0(最佳 pH 值为 8.0)。基于 16S rRNA 基因序列的系统发育分析表明,菌株 CAU 1555属于陶厄氏菌属,与热泉陶厄氏菌 GD-2(98.4%序列相似性)、湖陶厄氏菌 D20(96.6%)和里氏木霉 47Lol(95.5%)密切相关。菌株 CAU 1555含有磷脂酰甘油、双磷脂酰甘油、磷脂酰乙醇胺、一种未鉴定的磷脂和一种氨基磷脂作为主要极性脂;Q-8 作为主要的呼吸醌;C1 和/或 C 总和特征 3(包括 C1 和/或 C)和 C/ C 总和特征 8(包括 C/ C)作为主要脂肪酸。新分离株与 T. hydrothermalis GD-2 的平均核苷酸同一性(ANI)、平均氨基酸同一性(AAI)和数字 DNA-DNA 杂交(dDDH)值分别为 84.5%、86.4%和 28.0%。CAU 1555 菌株的全基因组测序显示,其基因组大小为 3,955,289bp,GC 含量为 68.0mol%。基于多相特性和基因组分析的结果,该分离株代表了陶厄氏菌属中的一个新种,建议将其命名为沉积物陶厄氏菌 sp. nov.,CAU 1555(=KCTC 72546=MCCC 1K04065)为其模式菌株。

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Front Microbiol. 2018 Oct 16;9:2491. doi: 10.3389/fmicb.2018.02491. eCollection 2018.
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