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新种海滨海杆菌,从沿海沙地分离得到。

Marinobacterium arenosum sp. nov., isolated from a coastal sand.

作者信息

Lee Yunjeong, Weerawongwiwat Veeraya, Kim Jong-Hwa, Yoon Jung-Hoon, Lee Jung-Sook, Sukhoom Ampaitip, Kim Wonyong

机构信息

Department of Microbiology, Chung-Ang University College of Medicine, Seoul, Republic of Korea.

Department of Food Science and Biotechnology, Sungkyunkwan University, Suwon, Republic of Korea.

出版信息

Arch Microbiol. 2022 Apr 22;204(5):276. doi: 10.1007/s00203-022-02900-2.

Abstract

A Gram-negative, aerobic, motile, rod-shaped bacterium, designated strain CAU 1594, was isolated from a coastal sand sample collected in the Republic of Korea. Cells of strain CAU 1594 grew best at 30 °C, pH 7.5, and in the presence of 1% (w/v) NaCl. Phylogenetic analysis, based on 16S rRNA gene sequencing, indicated that strain CAU 1594 was affiliated with the genus Marinobacterium and most similar to Marinobacterium jannaschii ATCC 27135 (95.1%) and Marinobacterium stanieri ATCC 27130 (94.9%). The whole genome of strain CAU 1594 was 4,917,683 bp, including 4,188 CDSs, with a 60.4 mol% G + C content. Based on draft genome sequences, the average nucleotide identity and digital DNA-DNA hybridization values of strain CAU 1594 were within the ranges of 71.9-73.1% and 20.0-2.1%, respectively, compared to reference strains. The major respiratory quinone was ubiquinone-8, and the major fatty acids were C, summed feature 3 (C ω6c and C ω7c), and summed feature 8 (C ω6c and C ω7c). The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine. Based on these results, strain CAU 1594 represents a novel species of the genus Marinobacterium, for which the name Marinobacterium arenosum sp. nov. is proposed. The type strain is CAU 1594 (=KCTC 82405=MCCC 1K05672).

摘要

从韩国采集的沿海沙滩样本中分离出一株革兰氏阴性、需氧、运动性、杆状细菌,命名为CAU 1594菌株。CAU 1594菌株在30°C、pH 7.5以及1%(w/v)NaCl存在的条件下生长最佳。基于16S rRNA基因测序的系统发育分析表明,CAU 1594菌株属于海杆菌属,与詹氏海杆菌ATCC 27135(95.1%)和斯坦尼尔海杆菌ATCC 27130(94.9%)最为相似。CAU 1594菌株的全基因组为4,917,683 bp,包括4,188个编码序列,G+C含量为60.4 mol%。基于基因组草图序列,与参考菌株相比,CAU 1594菌株的平均核苷酸同一性和数字DNA-DNA杂交值分别在71.9 - 73.1%和20.0 - 2.1%的范围内。主要呼吸醌为泛醌-8,主要脂肪酸为C、总和特征3(C ω6c和C ω7c)以及总和特征8(C ω6c和C ω7c)。极性脂类为双磷脂酰甘油、磷脂酰甘油和磷脂酰乙醇胺。基于这些结果,CAU 1594菌株代表海杆菌属的一个新物种,为此提出名为沙海杆菌(Marinobacterium arenosum sp. nov.)。模式菌株为CAU 1594(=KCTC 82405 =MCCC 1K05672)。

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