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工程化具有合理设计细胞相互作用的微生物群落。

Engineering microbial consortia with rationally designed cellular interactions.

机构信息

Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, USA; Intelligence Community Postdoctoral Research Fellowship Program, University of Illinois Urbana-Champaign, Urbana, IL, USA.

Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA; Department of Physics, University of Illinois Urbana-Champaign, Urbana, IL, USA; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA; National Center for Supercomputing Applications, Urbana, IL, USA.

出版信息

Curr Opin Biotechnol. 2022 Aug;76:102730. doi: 10.1016/j.copbio.2022.102730. Epub 2022 May 21.

Abstract

Synthetic microbial consortia represent a frontier of synthetic biology that promises versatile engineering of cellular functions. They are primarily developed through the design and construction of cellular interactions that coordinate individual dynamics and generate collective behaviors. Here we review recent advances in the engineering of synthetic communities through cellular-interaction programming. We first examine fundamental building blocks for intercellular communication and unidirectional positive and negative interactions. We then recap the assembly of the building blocks for creating bidirectional interactions in two-species ecosystems, which is followed by the discussion of engineering toward complex communities with increasing species numbers, under spatial contexts, and via model-guided design. We conclude by summarizing major challenges and future opportunities of engineered microbial ecosystems.

摘要

合成微生物群落代表了合成生物学的一个前沿领域,有望对细胞功能进行多功能工程改造。它们主要是通过设计和构建细胞间相互作用来开发的,这些相互作用协调个体动态并产生集体行为。在这里,我们通过细胞间相互作用编程来回顾合成群落工程的最新进展。我们首先研究细胞间通讯和单向正、负相互作用的基本构建块。然后,我们总结了在两个物种生态系统中构建双向相互作用的构建块的组装,接着讨论了在空间背景下通过模型指导设计来构建具有越来越多种类的复杂群落的工程。最后,我们总结了工程微生物生态系统的主要挑战和未来机遇。

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