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生物信息学分析鉴定肾移植术后急性肾损伤的多个枢纽基因。

Identification of Multiple Hub Genes in Acute Kidney Injury after Kidney Transplantation by Bioinformatics Analysis.

机构信息

Department of Oral and Maxillofacial Pathology, School of Dentistry, Kyung Hee University, Seoul 02447, Korea.

Neuroscience Center of Excellence, Louisiana State University School of Medicine, New Orleans, LA 70112, USA.

出版信息

Medicina (Kaunas). 2022 May 20;58(5):681. doi: 10.3390/medicina58050681.

DOI:10.3390/medicina58050681
PMID:35630098
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9145685/
Abstract

: The molecular mechanisms of the development of acute kidney injury (AKI) after kidney transplantation are not yet clear. The aim of this study was to confirm the genes and mechanisms related to AKI after transplantation. : To investigate potential genetic targets for AKI, an analysis of the gene expression omnibus database was used to identify key genes and pathways. After identification of differentially expressed genes, Kyoto Encyclopedia of Genes and Genome pathway enrichment analyses were performed. We identified the hub genes and established the protein-protein interaction network. : Finally, we identified 137 differentially expressed genes (59 upregulated genes and 16 downregulated genes). AKAP12, AMOT, C3AR1, LY96, PIK3AP1, PLCD4, PLCG2, TENM2, TLR2, and TSPAN5 were filtrated by the hub genes related to the development of post-transplant AKI from the Protein-Protein Interaction (PPI) network. : This may provide important evidence of the diagnostic and therapeutic biomarker of AKI.

摘要

在肾移植后发生急性肾损伤(AKI)的分子机制尚不清楚。本研究旨在确认与移植后 AKI 相关的基因和机制。

为了研究 AKI 的潜在遗传靶标,我们使用基因表达综合数据库分析来鉴定关键基因和途径。在鉴定出差异表达基因后,进行京都基因与基因组百科全书通路富集分析。我们鉴定了枢纽基因,并建立了蛋白质-蛋白质相互作用网络。

最后,我们确定了 137 个差异表达基因(59 个上调基因和 16 个下调基因)。通过蛋白质-蛋白质相互作用(PPI)网络中的枢纽基因,从 AKI 发展的相关基因中筛选出 AKAP12、AMOT、C3AR1、LY96、PIK3AP1、PLCD4、PLCG2、TENM2、TLR2 和 TSPAN5。

这可能为 AKI 的诊断和治疗生物标志物提供重要依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cf4/9145685/514a8e1e1cfa/medicina-58-00681-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cf4/9145685/3017d6758a6a/medicina-58-00681-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cf4/9145685/11d340b9752a/medicina-58-00681-g002a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cf4/9145685/514a8e1e1cfa/medicina-58-00681-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cf4/9145685/3017d6758a6a/medicina-58-00681-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cf4/9145685/11d340b9752a/medicina-58-00681-g002a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cf4/9145685/514a8e1e1cfa/medicina-58-00681-g004.jpg

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本文引用的文献

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Diabetologia. 2022 Sep;65(9):1495-1509. doi: 10.1007/s00125-022-05735-0. Epub 2022 Jun 28.
2
Five-gene signature predicts acute kidney injury in early kidney transplant patients.五基因标志物预测早期肾移植患者的急性肾损伤。
Aging (Albany NY). 2022 Mar 23;14(6):2628-2644. doi: 10.18632/aging.203962.
3
Acute Kidney Injury (AKI) before and after Kidney Transplantation: Causes, Medical Approach, and Implications for the Long-Term Outcomes.
肾移植前后的急性肾损伤:病因、医学处理及对长期预后的影响
J Clin Med. 2021 Apr 2;10(7):1484. doi: 10.3390/jcm10071484.
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Role of intracellular complement activation in kidney fibrosis.细胞内补体激活在肾脏纤维化中的作用。
Br J Pharmacol. 2021 Jul;178(14):2880-2891. doi: 10.1111/bph.15408. Epub 2021 Feb 27.
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The mRNA landscape profiling reveals potential biomarkers associated with acute kidney injury AKI after kidney transplantation.mRNA图谱分析揭示了与肾移植后急性肾损伤(AKI)相关的潜在生物标志物。
PeerJ. 2020 Nov 27;8:e10441. doi: 10.7717/peerj.10441. eCollection 2020.
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Notch signaling regulates Akap12 expression and primary cilia length during renal tubule morphogenesis.Notch 信号通路调控肾单位发生过程中 Akap12 的表达和初级纤毛长度。
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