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编码潜在分子模拟蛋白的基因作为聚合酶链反应和环介导等温扩增检测中的特异性检测靶点。

Genes Encoding Potential Molecular Mimicry Proteins as the Specific Targets for Detecting in PCR and Loop-Mediated Isothermal Amplification Assays.

作者信息

Meng Fanli, Liu Zhenkai, Li Yongxia, Zhang Xingyao

机构信息

The Key Laboratory for Silviculture and Conservation of Ministry of Education, College of Forestry, Beijing Forestry University, Beijing, China.

Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China.

出版信息

Front Plant Sci. 2022 May 11;13:890949. doi: 10.3389/fpls.2022.890949. eCollection 2022.

DOI:10.3389/fpls.2022.890949
PMID:35646005
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9131030/
Abstract

The introduction of the pine wood nematode () to new areas has affected the international forestry industry because this pathogen causes pine wilt disease (PWD). Therefore, methods for the accurate and reliable detection of are essential for controlling and managing this pest. The PCR and Loop-Mediated Isothermal Amplification (LAMP) techniques developed in this study involve species-specific primer sets targeting genes encoding potential molecular mimicry proteins (, , and ), which are associated with pathogenicity. The PCR and LAMP results revealed that the primers were specific for , , and . Moreover, our LAMP assay targeting conducted at 63°C detected within 20 min and from or within 30 min. The lower limits of detection for the LAMP and PCR assays were 10 pg and 10 ng genomic DNA, respectively, implying these assays may be useful for the rapid detection of in pine forests. Designing primers specific for , , and enabled the relatively rapid detection of isolates as well as or carrying . These primers, which were designed following a thorough functional analysis of key pathogenicity-related genes, may be useful for developing improved assays for the early diagnosis and prevention of PWD.

摘要

松材线虫()传入新区域对国际林业产业造成了影响,因为这种病原体会引发松材线虫病(PWD)。因此,准确可靠地检测松材线虫的方法对于控制和管理这种害虫至关重要。本研究开发的聚合酶链式反应(PCR)和环介导等温扩增(LAMP)技术涉及针对编码潜在分子模拟蛋白(、和)的基因的物种特异性引物组,这些蛋白与致病性相关。PCR和LAMP结果表明,这些引物对、和具有特异性。此外,我们在63°C进行的针对的LAMP检测在20分钟内检测到松材线虫,在30分钟内检测到来自或携带松材线虫的。LAMP和PCR检测的最低检测限分别为10 pg和10 ng基因组DNA,这意味着这些检测方法可能有助于在松林快速检测松材线虫。设计针对、和的特异性引物能够相对快速地检测松材线虫分离株以及携带松材线虫的或。这些引物是在对松材线虫关键致病相关基因进行全面功能分析后设计的,可能有助于开发改进的检测方法用于松材线虫病的早期诊断和预防。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e36c/9131030/76c7bcb0f9a0/fpls-13-890949-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e36c/9131030/ad116006ef7c/fpls-13-890949-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e36c/9131030/524eac1d30e3/fpls-13-890949-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e36c/9131030/6537eccb5690/fpls-13-890949-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e36c/9131030/76c7bcb0f9a0/fpls-13-890949-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e36c/9131030/ad116006ef7c/fpls-13-890949-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e36c/9131030/524eac1d30e3/fpls-13-890949-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e36c/9131030/6537eccb5690/fpls-13-890949-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e36c/9131030/76c7bcb0f9a0/fpls-13-890949-g004.jpg

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Nature. 2021 May;593(7859):391-398. doi: 10.1038/s41586-021-03447-w. Epub 2021 May 19.
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