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本文引用的文献

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DOE JGI Metagenome Workflow.美国能源部联合基因组研究所宏基因组工作流程
mSystems. 2021 May 18;6(3):e00804-20. doi: 10.1128/mSystems.00804-20.
2
MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices.MEGAHIT v1.0：一种由先进方法和社区实践驱动的快速且可扩展的宏基因组组装工具。
Methods. 2016 Jun 1;102:3-11. doi: 10.1016/j.ymeth.2016.02.020. Epub 2016 Mar 21.
3
Ice cover extent drives phytoplankton and bacterial community structure in a large north-temperate lake: implications for a warming climate.冰盖范围驱动着一个大型北温带湖泊中的浮游植物和细菌群落结构：对气候变暖的影响。
Environ Microbiol. 2016 Jun;18(6):1704-19. doi: 10.1111/1462-2920.12819. Epub 2015 Mar 27.
4
Seasonal changes in microbial community structure and activity imply winter production is linked to summer hypoxia in a large lake.季节变化对微生物群落结构和活性的影响暗示了大型湖泊冬季生产力与夏季缺氧的关系。
FEMS Microbiol Ecol. 2014 Feb;87(2):475-85. doi: 10.1111/1574-6941.12238. Epub 2013 Nov 13.

对五大湖之一的伊利湖冬春浮游生物群落进行宏转录组测序。

Metatranscriptomic Sequencing of Winter and Spring Planktonic Communities from Lake Erie, a Laurentian Great Lake.

作者信息

Zepernick Brittany N, Denison Elizabeth R, Chaffin Justin D, Bullerjahn George S, Pennacchio Christa P, Frenken Thijs, Peck Daniel H, Anderson James T, Niles Derek, Zastepa Arthur, McKay R Michael L, Wilhelm Steven W

机构信息

Department of Microbiology, University of Tennessee, Knoxville, Tennessee, USA.

Stone Laboratory and Ohio Sea Grant, Ohio State University, Put-in-Bay, Ohio, USA.

出版信息

Microbiol Resour Announc. 2022 Jul 21;11(7):e0035122. doi: 10.1128/mra.00351-22. Epub 2022 Jun 2.

DOI:10.1128/mra.00351-22
PMID:35652650
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9302102/
Abstract

Previous reports suggest planktonic and under-ice winter microbial communities in Lake Erie are dominated by diatoms. Here, we report the assembled metatranscriptomes of 79 Lake Erie surface water microbial communities spanning both the winter (28 samples) and spring (51 samples) months over spatial, temporal, and climatic gradients in 2019 through 2020.

摘要

先前的报告表明，伊利湖的浮游和冰下冬季微生物群落以硅藻为主。在此，我们报告了2019年至2020年期间，跨越空间、时间和气候梯度的79个伊利湖表层水微生物群落的组装元转录组，这些群落涵盖了冬季（28个样本）和春季（51个样本）月份。