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社区居民分离的大肠杆菌中携带 mcr-1 标记单个核苷酸突变的质粒的水平转移。

Horizontal transfer of a plasmid possessing mcr-1 marked with a single nucleotide mutation between Escherichia coli isolates from community residents.

机构信息

United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University, Gifu, Japan.

Department of Microbiology, Osaka Institute of Public Health, Osaka, Japan.

出版信息

BMC Res Notes. 2022 Jun 3;15(1):196. doi: 10.1186/s13104-022-06079-z.

Abstract

OBJECTIVES

The widespread dissemination of phenotypic colistin-resistant (COR) bacteria in the community threatens public health. The horizontal gene transfer of the mobile colistin resistance gene via plasmids is thought to be one of the main mechanisms for dissemination. However, genotypic evidence to prove this in community settings is limited. This study used genome analysis to demonstrate the direct horizontal colistin resistance gene transfer via plasmids in isolates from the community.

RESULTS

A total of 19 isolates of COR Escherichia coli from stool specimens of 23 residents from seven households in the Vietnamese community were assessed in this study. The whole-genome sequence data of isolates were acquired using a combination of DNBSEQ short-reads and Nanopore long-read sequencing. Analysis of genomic data was performed using online tools such as Geneious. Analysis of the genomic information of COR E. coli isolates revealed that the isolates from two residents of different households had a similar IncP1 plasmid possessing mcr-1.1, marked with a single nucleotide mutation at the same position. The study provided direct evidence to prove that mcr was horizontally transmitted among bacteria in community residents.

摘要

目的

表型多黏菌素耐药(COR)细菌在社区中的广泛传播威胁着公众健康。通过质粒进行移动多黏菌素耐药基因的水平基因转移被认为是传播的主要机制之一。然而,在社区环境中证明这一机制的基因型证据有限。本研究使用基因组分析证明了社区分离株中通过质粒的直接水平多黏菌素耐药基因转移。

结果

本研究评估了来自越南社区 7 户家庭 23 位居民粪便标本中的 19 株 COR 大肠埃希菌。使用 DNBSEQ 短读序列和 Nanopore 长读序列组合获得了分离株的全基因组序列数据。使用在线工具(如 Geneious)对基因组数据进行分析。对 COR 大肠埃希菌分离株的基因组信息分析表明,来自不同家庭的两位居民的分离株具有相似的 IncP1 质粒,该质粒携带 mcr-1.1,并在相同位置发生单核苷酸突变。该研究提供了直接证据证明 mcr 在社区居民中的细菌之间发生了水平传播。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29cd/9166650/7a8f45800c8d/13104_2022_6079_Fig1_HTML.jpg

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