Department of Plant and Microbial Biology, University of Zurich, 8008, Zürich, Switzerland.
Department of Environmental Sciences - Botany, University of Basel, 4056, Basel, Switzerland.
New Phytol. 2022 Oct;236(1):182-194. doi: 10.1111/nph.18322. Epub 2022 Jul 9.
Eukaryotic genomes contain a vast diversity of transposable elements (TEs). Formerly often described as selfish and parasitic DNA sequences, TEs are now recognised as a source of genetic diversity and powerful drivers of evolution. However, because their mobility is tightly controlled by the host, studies experimentally assessing how fast TEs may mediate the emergence of adaptive traits are scarce. We exposed Arabidopsis thaliana high-copy TE lines (hcLines) with up to c. eight-fold increased copy numbers of the heat-responsive ONSEN TE to drought as a straightforward and ecologically highly relevant selection pressure. We provide evidence for increased drought tolerance in five out of the 23 tested hcLines and further pinpoint one of the causative mutations to an exonic insertion of ONSEN in the ribose-5-phosphate-isomerase 2 gene. The resulting loss-of-function mutation caused a decreased rate of photosynthesis, plant size and water consumption. Overall, we show that the heat-induced transposition of a low-copy TE increases phenotypic diversity and leads to the emergence of drought-tolerant individuals in A. thaliana. This is one of the rare empirical examples substantiating the adaptive potential of mobilised stress-responsive TEs in eukaryotes. Our work demonstrates the potential of TE-mediated loss-of-function mutations in stress adaptation.
真核生物基因组中包含着大量的转座元件(TEs)。TEs 曾经常被描述为自私和寄生的 DNA 序列,但现在被认为是遗传多样性的来源和进化的强大驱动力。然而,由于它们的移动性受到宿主的严格控制,因此很少有实验研究评估 TEs 可能在多快的速度下介导适应性特征的出现。我们将拟南芥高拷贝 TE 系(hcLines)暴露在干旱作为一种简单且在生态学上高度相关的选择压力下,这些 hcLines 的 ONSEN TE 的拷贝数增加了约 8 倍。我们在 23 个测试的 hcLines 中有 5 个提供了耐旱性增强的证据,并进一步将一个致因突变确定为 ONSEN 在核酮糖-5-磷酸异构酶 2 基因中的外显子插入。由此产生的功能丧失突变导致光合作用、植物大小和耗水量降低。总的来说,我们表明,低拷贝 TE 的热诱导转座增加了表型多样性,并导致拟南芥中耐旱个体的出现。这是为数不多的实证例子之一,证明了可移动的应激响应 TEs 在真核生物中的适应潜力。我们的工作证明了 TE 介导的功能丧失突变在应激适应中的潜力。