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物种及：系统发育、基于基因组学的分类学、致病性与诊断学

spp. and : Phylogeny, Genomics-Based Taxonomy, Pathogenicity, and Diagnostics.

作者信息

Evseev Peter, Lukianova Anna, Tarakanov Rashit, Tokmakova Anna, Shneider Mikhail, Ignatov Alexander, Miroshnikov Konstantin

机构信息

Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Miklukho-Maklaya Str., 16/10, 117997 Moscow, Russia.

Limnological Institute, Siberian Branch of Russian Academy of Sciences, Ulan-Batorskaya Str., 3, 664033 Irkutsk, Russia.

出版信息

Curr Issues Mol Biol. 2022 Feb 11;44(2):889-927. doi: 10.3390/cimb44020060.

DOI:10.3390/cimb44020060
PMID:35723345
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8929003/
Abstract

The genus of , belonging to the family of the order, includes economically significant pathogenic bacteria of soybeans and other agricultural crops. Thorough phylogenetic and full-genome analysis using the latest genomic data has demonstrated a complex and contradictory taxonomic picture within the group of organisms classified as the species. Based on these data, it is possible to delineate about 50 new species and to reclassify a substantial part of the strains. It is suggested that 53 strains, including most of the pathovars, can compose a monophyletic group classified as . A genomic analysis using the most recent inventory of bacterial chromosomal and plasmid genomes deposited to GenBank confirmed the possible role of plasmids in pathogenicity and demonstrated the existence of a group of related plasmids carrying virulence factors and possessing a gene distantly related to DNA polymerase found in bacteriophages and archaeal and eukaryotic viruses. A PCR diagnostic assay specific to the genus was developed and tested. The presented results assist in the understanding of the evolutionary relations within the genus and can lay the foundation for further taxonomic updates.

摘要

属于 目 科的 属包括对大豆和其他农作物具有重要经济意义的病原菌。使用最新基因组数据进行的深入系统发育和全基因组分析表明，在被归类为 种的生物群体中，分类学情况复杂且相互矛盾。基于这些数据，可以划分出约50个新物种，并对大部分 菌株进行重新分类。有人提出，包括大多数 致病型在内的53个菌株可组成一个单系群，归类为 。使用存入GenBank的最新细菌染色体和质粒基因组清单进行的基因组分析证实了 质粒在致病性中的可能作用，并证明存在一组携带毒力因子且拥有与噬菌体、古菌和真核病毒中发现的DNA聚合酶远缘相关基因的相关质粒。开发并测试了一种针对 属的PCR诊断方法。所呈现的结果有助于理解该属内的进化关系，并可为进一步的分类学更新奠定基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8acf/8929003/f62f26135dad/cimb-44-00060-g011.jpg
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2
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3
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Mol Genet Genomics. 2024 Nov 1;299(1):105. doi: 10.1007/s00438-024-02194-7.
5
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