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南极海洋细菌 sp. CBMAI 2942 的几丁质酶的基因组学、蛋白质组学和抗真菌活性。

Genomics, Proteomics, and Antifungal Activity of Chitinase from the Antarctic Marine Bacterium sp. CBMAI 2942.

机构信息

Divisão de Recursos Microbianos, Centro Pluridisciplinar de Pesquisas Químicas, Biológicas e Agrícolas (CPQBA), Universidade Estadual de Campinas (UNICAMP), Paulínia 13148-218, SP, Brazil.

Institute of Biology, Campinas State University (UNICAMP), Campinas 13083-970, SP, Brazil.

出版信息

Int J Mol Sci. 2024 Aug 26;25(17):9250. doi: 10.3390/ijms25179250.

Abstract

This study aimed to evaluate the genomic profile of the Antarctic marine sp. CBMAI 2942, as well as to optimize the conditions for chitinase production and antifungal potential for biological control. Assembly and annotation of the genome confirmed the genomic potential for chitinase synthesis, revealing two ChBDs of chitin binding (Chi C). The optimization enzyme production using an experimental design resulted in a 3.7-fold increase in chitinase production. The chitinase enzyme was identified by SDS-PAGE and confirmed through mass spectrometry analysis. The enzymatic extract obtained using acetone showed antifungal activity against the phytopathogenic fungus sp. series CBMAI 1846. The genetic capability of sp. CBMAI 2942 for chitin degradation was confirmed through genomic analysis. The basal culture medium was adjusted, and the chitinase produced by this isolate from Antarctica showed significant inhibition against sp. series CBMAI 1846, which is a tomato phytopathogenic fungus. This suggests that this marine bacterium could potentially be used as a biological control of agricultural pests.

摘要

本研究旨在评估南极海洋 sp. CBMAI 2942 的基因组特征,并优化几丁质酶生产条件和生物防治的抗真菌潜力。基因组的组装和注释证实了几丁质酶合成的基因组潜力,揭示了两个几丁质结合结构域(Chi C)。通过实验设计优化酶生产,使几丁质酶产量增加了 3.7 倍。通过 SDS-PAGE 鉴定了几丁质酶,并通过质谱分析进行了确认。使用丙酮获得的酶提取物对植物病原菌 sp. 系列 CBMAI 1846 表现出抗真菌活性。通过基因组分析证实了 sp. CBMAI 2942 降解几丁质的遗传能力。调整了基础培养基,该分离株从南极洲产生的几丁质酶对番茄植物病原菌 sp. 系列 CBMAI 1846 表现出显著的抑制作用。这表明这种海洋细菌有可能被用作农业害虫的生物防治剂。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fcf/11395076/7718c44bb36d/ijms-25-09250-g001.jpg

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