Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
College of Animal Science and Technology, China Agricultural University, Beijing, China.
BMC Genomics. 2022 Jun 21;23(1):457. doi: 10.1186/s12864-022-08657-8.
Hu sheep and Tibetan sheep in China are characterized by fat tails and thin tails, respectively. Several transcriptomes have been conducted in different sheep breeds to identify the differentially expressed genes (DEGs) underlying this trait. However, these studies identified different DEGs in different sheep breeds.
Hence, RNA sequencing was performed on Hu sheep and Tibetan sheep. We obtained a total of 45.57 and 43.82 million sequencing reads, respectively. Two libraries mapped reads from 36.93 and 38.55 million reads after alignment to the reference sequences. 2108 DEGs were identified, including 1247 downregulated and 861 upregulated DEGs. GO and KEGG analyses of all DEGs demonstrated that pathways were enriched in the regulation of lipolysis in adipocytes and terms related to the chemokine signalling pathway, lysosomes, and glycosaminoglycan degradation. Eight genes were selected for validation by RT-qPCR. In addition, the transfection of BMP2 overexpression into preadipocytes resulted in increased PPAR-γ expression and expression. BMP2 potentially induces adipogenesis through LOX in preadipocytes. The number of lipid drops in BMP2 overexpression detected by oil red O staining was also greater than that in the negative control.
In summary, these results showed that significant genes (BMP2, HOXA11, PPP1CC and LPIN1) are involved in the regulation of adipogenesis metabolism and suggested novel insights into metabolic molecules in sheep fat tails.
中国的湖羊和藏羊分别以脂肪尾和细尾为特征。已经在不同的绵羊品种中进行了几个转录组研究,以鉴定与该特征相关的差异表达基因(DEGs)。然而,这些研究在不同的绵羊品种中鉴定了不同的 DEGs。
因此,对湖羊和藏羊进行了 RNA 测序。我们分别获得了总共 4557 万和 4382 万条测序reads。在对齐到参考序列后,两个文库分别映射了 3693 万和 3855 万reads。鉴定了 2108 个 DEGs,包括 1247 个下调和 861 个上调的 DEGs。所有 DEGs 的 GO 和 KEGG 分析表明,途径富集在脂肪细胞中脂解的调节和与趋化因子信号通路、溶酶体和糖胺聚糖降解相关的术语中。选择了 8 个基因进行 RT-qPCR 验证。此外,将 BMP2 过表达转染到前体脂肪细胞中导致 PPAR-γ表达增加。BMP2 可能通过前体脂肪细胞中的 LOX 诱导脂肪生成。用油红 O 染色检测到的 BMP2 过表达中的脂滴数量也比阴性对照多。
总之,这些结果表明,显著基因(BMP2、HOXA11、PPP1CC 和 LPIN1)参与了脂肪生成代谢的调节,并为绵羊脂肪尾的代谢分子提供了新的见解。