College of Forestry, Basic Forestry and Proteomics Research Center, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
College of Life Science, Basic Forestry and Proteomics Research Center, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Int J Mol Sci. 2022 Jun 10;23(12):6491. doi: 10.3390/ijms23126491.
The nucleosome assembly protein 1 (NAP1) family is the main histone chaperone of histone H2A-H2B. To explore the function of NAP1 family genes in moso bamboo (), characterized by extremely rapid growth and a long flowering cycle, we originally conducted a genome-wide analysis of the PheNAP1 gene. The phylogenetic relationship, gene expression pattern, DNA methylation, and histone modification were analyzed. Eventually, 12 PheNAP1 genes were recognized from the genome, divided into two sorts: the NRP subfamily (four members) and the NAP subfamily (eight members). Highly conserved motifs exist in each subfamily, which are distinct between subfamilies. PheNAP1 was distributed homogeneously on 10 out of 24 chromosomes, and gene duplication contributed significantly to the enhancement of the PheNAP1 gene in the genome. -acting element analysis showed that PheNAP1 family genes are involved in light, hormone, and abiotic stress responses and may play an important role in the rapid growth and flowering. PheNAP1 exhibited the highest expression level in fast-growing shoots, indicating it is closely associated with the rapid growth of moso bamboo. Besides, PheNAP1 can rescue the early-flowering phenotype of , and it affected the expression of genes related to the flowering pathway, like , suggesting the vital role that PheNAP1 may take in the flowering process of moso bamboo. In addition, histone modification results showed that PheNAP1 could bind to phosphorylation-, acetylation-, and methylation-modified histones to further regulate gene expression. A sketch appears: that PheNAP1 can accompany histones to regulate fast-growth- and flowering-related genes in moso bamboo. The consequences of this study enrich the understanding of the epigenetic regulation mechanism of bamboo plants and lays a foundation for further studies on the role of the NAP1 gene in and the function of chromatin regulation in forest growth and development.
核小体组装蛋白 1 (NAP1) 家族是组蛋白 H2A-H2B 的主要组蛋白伴侣。为了探索 NAP1 家族基因在毛竹()中的功能,毛竹具有生长迅速和开花周期长的特点,我们最初对 PheNAP1 基因进行了全基因组分析。分析了系统发育关系、基因表达模式、DNA 甲基化和组蛋白修饰。最终,从 基因组中识别出 12 个 PheNAP1 基因,分为 NRP 亚家族(四个成员)和 NAP 亚家族(八个成员)。每个亚家族都存在高度保守的基序,亚家族之间存在明显差异。PheNAP1 均匀分布在 24 条染色体中的 10 条上,基因复制对 PheNAP1 基因在基因组中的扩增有重要贡献。- 作用元件分析表明,PheNAP1 家族基因参与光、激素和非生物胁迫反应,可能在毛竹的快速生长和开花中发挥重要作用。PheNAP1 在快速生长的枝条中表达水平最高,表明其与毛竹的快速生长密切相关。此外,PheNAP1 可以挽救 的早花表型,并且它影响与开花途径相关的基因的表达,如 ,表明 PheNAP1 可能在毛竹开花过程中起着至关重要的作用。此外,组蛋白修饰结果表明,PheNAP1 可以与磷酸化、乙酰化和甲基化修饰的组蛋白结合,从而进一步调节基因表达。出现草图:PheNAP1 可以伴随组蛋白调节毛竹中与快速生长和开花相关的基因。本研究的结果丰富了对竹类植物表观遗传调控机制的认识,为进一步研究 NAP1 基因在 中的作用以及染色质调控在森林生长发育中的功能奠定了基础。