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与外周血管疾病相关的微小RNA调控网络

miRNA Regulatory Networks Associated with Peripheral Vascular Diseases.

作者信息

Zalewski Daniel P, Ruszel Karol P, Stępniewski Andrzej, Gałkowski Dariusz, Feldo Marcin, Kocki Janusz, Bogucka-Kocka Anna

机构信息

Chair and Department of Biology and Genetics, Medical University of Lublin, 4a Chodźki St., 20-093 Lublin, Poland.

Department of Clinical Genetics, Chair of Medical Genetics, Medical University of Lublin, 11 Radziwiłłowska St., 20-080 Lublin, Poland.

出版信息

J Clin Med. 2022 Jun 16;11(12):3470. doi: 10.3390/jcm11123470.

Abstract

A growing body of evidence indicates a crucial role of miRNA regulatory function in a variety of mechanisms that contribute to the development of diseases. In our previous work, alterations in miRNA expression levels and targeted genes were shown in peripheral blood mononuclear cells (PBMCs) from patients with lower extremity artery disease (LEAD), abdominal aortic aneurysm (AAA), and chronic venous disease (CVD) in comparison with healthy controls. In this paper, previously obtained miRNA expression profiles were compared between the LEAD, AAA, and CVD groups to find either similarities or differences within the studied diseases. Differentially expressed miRNAs were identified using the DESeq2 method implemented in the R programming software. Pairwise comparisons (LEAD vs. AAA, LEAD vs. CVD, and AAA vs. CVD) were performed and revealed 10, 8, and 17 differentially expressed miRNA transcripts, respectively. The functional analysis of the obtained miRNAs was conducted using the miRNet 2.0 online tool and disclosed associations with inflammation and cellular differentiation, motility, and death. The miRNet 2.0 tool was also used to identify regulatory interactions between dysregulated miRNAs and target genes in patients with LEAD, AAA, and CVD. The presented research provides new information about similarities and differences in the miRNA-dependent regulatory mechanisms involved in the pathogenesis of LEAD, AAA, and CVD.

摘要

越来越多的证据表明,miRNA调控功能在多种导致疾病发生的机制中起着关键作用。在我们之前的研究中,与健康对照相比,下肢动脉疾病(LEAD)、腹主动脉瘤(AAA)和慢性静脉疾病(CVD)患者外周血单核细胞(PBMC)中的miRNA表达水平和靶向基因发生了改变。在本文中,对先前获得的LEAD、AAA和CVD组的miRNA表达谱进行了比较,以找出所研究疾病之间的异同。使用R编程软件中实现的DESeq2方法鉴定差异表达的miRNA。进行了两两比较(LEAD与AAA、LEAD与CVD、AAA与CVD),分别揭示了10、8和17个差异表达的miRNA转录本。使用miRNet 2.0在线工具对获得的miRNA进行功能分析,结果显示其与炎症以及细胞分化、运动和死亡有关。miRNet 2.0工具还用于鉴定LEAD、AAA和CVD患者中失调的miRNA与靶基因之间的调控相互作用。本研究提供了有关LEAD、AAA和CVD发病机制中涉及的miRNA依赖性调控机制异同的新信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2277/9224609/1d22af9ea957/jcm-11-03470-g001.jpg

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