Farquharson Katherine A, McLennan Elspeth A, Cheng Yuanyuan, Alexander Lauren, Fox Samantha, Lee Andrew V, Belov Katherine, Hogg Carolyn J
School of Life and Environmental Sciences, The University of Sydney, NSW 2006, Australia.
Save the Tasmanian Devil Program, NRE Tasmania, Hobart, Tas 7001, Australia.
iScience. 2022 May 26;25(7):104474. doi: 10.1016/j.isci.2022.104474. eCollection 2022 Jul 15.
Conservation breeding programs aim to maintain 90% wild genetic diversity, but rarely assess functional diversity. Here, we compare both genome-wide and functional diversity (in over 500 genes) of Tasmanian devils () within the insurance metapopulation and across the species' range (64,519 km). Populations have declined by 80% since 1996 due to a contagious cancer, devil facial tumor disease (DFTD). However, predicted local extinctions have not occurred. Recent suggestions of selection for "resistance" alleles in the wild precipitated concerns that insurance population devils may be unsuitable for translocations. Using 830 wild samples collected at 31 locations between 2012 and 2021, and 553 insurance metapopulation devils, we show that the insurance metapopulation is representative of current wild genetic diversity. Allele frequencies at DFTD-associated loci were not substantially different between captive and wild devils. Methods presented here are valuable for others investigating evolutionary potential in threatened species, particularly ones under significant selective pressures.
保护繁育计划旨在维持90%的野生遗传多样性,但很少评估功能多样性。在此,我们比较了保险复合种群内以及整个物种分布范围(64,519平方千米)内袋獾的全基因组多样性和功能多样性(超过500个基因)。自1996年以来,由于一种传染性癌症——袋獾面部肿瘤病(DFTD),其种群数量下降了80%。然而,预测的局部灭绝并未发生。最近关于在野外选择“抗性”等位基因的建议引发了人们对保险种群袋獾可能不适合迁移的担忧。我们使用2012年至2021年间在31个地点采集的830个野生样本以及553只保险复合种群袋獾,表明保险复合种群代表了当前的野生遗传多样性。圈养袋獾和野生袋獾在DFTD相关位点的等位基因频率没有显著差异。本文介绍的方法对其他研究受威胁物种进化潜力的人很有价值,尤其是那些面临重大选择压力的物种。