Blaney Giles, Sassaroli Angelo, Fantini Sergio
Department of Biomedical Engineering,Tufts University, 4 Colby Street, Medford, MA 02115, USA.
Biomed Signal Process Control. 2020 Feb;56. doi: 10.1016/j.bspc.2019.101704. Epub 2019 Oct 24.
A quantitative assessment of the level of coherence between two signals is important in many applications. Two biomedically relevant cases are Transfer Function Analysis (TFA) of Cerebral Autoregulation (CA) and Coherent Hemodynamics Spectroscopy (CHS), where the first signal is Arterial Blood Pressure (ABP) and the second signal is either cerebral Blood Flow Velocity (BFV) or cerebral hemoglobin concentration. To determine the time intervals and frequency bands in which the signals are significantly coherent, a coherence threshold is required. This threshold of significant coherence can be found using multiple samples of surrogate data to generate a distribution of coherence. Then the 95 percentile of the distribution can be used as the threshold corresponding to a significance level α = 0.05. However, storing the entire coherence distribution uses a large amount of computer memory. To address this problem, we have developed an algorithm to determine the coherence threshold with little memory usage. A subfield of data streaming algorithms is devoted to finding quantiles using little memory. This work does not aim to find a new streaming algorithm but rather to develop an algorithm that can be tailored to the needs of applications such as TFA and CHS. The algorithm presented here identifies the coherence thresholds for a wavelet scaleogram using much less memory then what would be required to store the entire coherence distribution.
在许多应用中,对两个信号之间的相干水平进行定量评估非常重要。两个与生物医学相关的案例是脑自动调节(CA)的传递函数分析(TFA)和相干血流动力学光谱(CHS),其中第一个信号是动脉血压(ABP),第二个信号是脑血流速度(BFV)或脑血红蛋白浓度。为了确定信号显著相干的时间间隔和频带,需要一个相干阈值。可以使用替代数据的多个样本生成相干分布,从而找到这个显著相干的阈值。然后,该分布的第95百分位数可以用作对应于显著性水平α = 0.05的阈值。然而,存储整个相干分布会占用大量计算机内存。为了解决这个问题,我们开发了一种算法,以很少的内存使用量来确定相干阈值。数据流算法的一个子领域致力于使用很少的内存来找到分位数。这项工作的目的不是找到一种新的流算法,而是开发一种可以根据TFA和CHS等应用需求进行定制的算法。这里提出的算法使用比存储整个相干分布所需的内存少得多的内存来识别小波尺度图的相干阈值。