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通过机械设计和化学加合物来调整弯曲的 DNA 折纸结构。

Tuning curved DNA origami structures through mechanical design and chemical adducts.

机构信息

Key Laboratory of Image Information Processing and Intelligent Control of Education Ministry of China, School of Artificial Intelligence and Automation, Huazhong University of Science and Technology, Wuhan, People's Republic of China.

College of Information Science and Technology, Shijiazhuang Tiedao University, Shijiazhuang, People's Republic of China.

出版信息

Nanotechnology. 2022 Jul 15;33(40). doi: 10.1088/1361-6528/ac7d62.

Abstract

The bending and twisting of DNA origami structures are important features for controlling the physical properties of DNA nanodevices. It has not been fully explored yet how to finely tune the bending and twisting of curved DNA structures. Traditional tuning of the curved DNA structures was limited to controlling the in-plane-bending angle through varying the numbers of base pairs of deletions and insertions. Here, we developed two tuning strategies of curved DNA origami structures fromandaspects., the out-of-plane bending and twisting angles of curved structures were introduced, and were tuned through varying the patterns of base pair deletions and insertions., a chemical adduct (ethidium bromide) was applied to dynamically tune a curved spiral. The 3D structural conformations, like chirality, of the curved DNA structures were finely tuned through these two strategies. The simulation and TEM results demonstrated that the patterns of base pair insertions and deletions and chemical adducts could effectively tune the bending and twisting of curved DNA origami structures. These strategies expand the programmable accuracy of curved DNA origami structures and have potential in building efficient dynamic functional nanodevices.

摘要

DNA 折纸结构的弯曲和扭曲是控制 DNA 纳米器件物理性质的重要特征。然而,如何精细地调节弯曲 DNA 结构的弯曲和扭曲程度还没有得到充分的探索。传统上,通过改变缺失和插入的碱基对数量来控制平面内弯曲角,从而对弯曲 DNA 结构进行精细调节。在这里,我们从两个方面开发了弯曲 DNA 折纸结构的两种调节策略。一方面,引入了弯曲结构的面外弯曲和扭曲角,并通过改变碱基对缺失和插入的模式进行调节。另一方面,应用化学加合物(溴化乙锭)来动态调节弯曲螺旋。通过这两种策略,可以精细地调节弯曲 DNA 结构的三维结构构象,如手性。模拟和 TEM 结果表明,碱基对插入和缺失模式以及化学加合物可以有效地调节弯曲 DNA 折纸结构的弯曲和扭曲。这些策略扩展了弯曲 DNA 折纸结构的可编程精度,并在构建高效动态功能纳米器件方面具有潜力。

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