Li Ruixin, Madhvacharyula Anirudh S, Du Yancheng, Adepu Harshith K, Choi Jong Hyun
School of Mechanical Engineering, Purdue University 585 Purdue Mall West Lafayette Indiana 47907 USA
Chem Sci. 2023 Jul 6;14(30):8018-8046. doi: 10.1039/d3sc01793a. eCollection 2023 Aug 2.
In DNA nanotechnology, DNA molecules are designed, engineered, and assembled into arbitrary-shaped architectures with predesigned functions. Static DNA assemblies often have delicate designs with structural rigidity to overcome thermal fluctuations. Dynamic structures reconfigure in response to external cues, which have been explored to create functional nanodevices for environmental sensing and other applications. However, the precise control of reconfiguration dynamics has been a challenge due partly to flexible single-stranded DNA connections between moving parts. Deformable structures are special dynamic constructs with deformation on double-stranded parts and single-stranded hinges during transformation. These structures often have better control in programmed deformation. However, related deformability and mechanics including transformation mechanisms are not well understood or documented. In this review, we summarize the development of dynamic and deformable DNA nanostructures from a mechanical perspective. We present deformation mechanisms such as single-stranded DNA hinges with lock-and-release pairs, jack edges, helicity modulation, and external loading. Theoretical and computational models are discussed for understanding their associated deformations and mechanics. We elucidate the pros and cons of each model and recommend design processes based on the models. The design guidelines should be useful for those who have limited knowledge in mechanics as well as expert DNA designers.
在DNA纳米技术中,DNA分子被设计、构建并组装成具有预先设计功能的任意形状的结构。静态DNA组件通常具有精巧的设计和结构刚性,以克服热涨落。动态结构会根据外部线索重新配置,人们已经探索利用这一点来创建用于环境传感及其他应用的功能性纳米器件。然而,由于运动部件之间存在柔性单链DNA连接,精确控制重新配置动力学一直是一个挑战。可变形结构是特殊的动态结构,在转变过程中双链部分和单链铰链会发生变形。这些结构在程序化变形方面通常具有更好的控制。然而,包括转变机制在内的相关可变形性和力学性质尚未得到充分理解或记录。在本综述中,我们从力学角度总结了动态和可变形DNA纳米结构的发展。我们介绍了诸如带有锁定-释放对的单链DNA铰链、千斤顶边缘、螺旋度调制和外部加载等变形机制。讨论了用于理解其相关变形和力学性质的理论和计算模型。我们阐明了每个模型的优缺点,并基于这些模型推荐设计流程。这些设计指南对于力学知识有限的人以及专业的DNA设计者都应该是有用的。