Department of Life Science, College of Natural Sciences, Kyonggi University, Suwon 16227, Republic of Korea.
J Microbiol Biotechnol. 2022 Jul 28;32(7):855-861. doi: 10.4014/jmb.2205.05018. Epub 2022 Jun 30.
A white-pigmented, non-motile, gram-negative, and rod-shaped bacterium, designated CYS-02, was isolated from soil sampled at Suwon, Gyeonggi-do, Republic of Korea. Cells were strictly aerobic, grew optimally at 20-28ºC and hydrolyzed Tween 40. Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain CYS-02 formed a lineage within the family and clustered as members of the genus . The closest members were DSM 27352 (98.6% sequence similarity), NBRC 15149 (98.5%), and JM-310 (98.3%). The principal respiratory quinone was Q-8 and the major polar lipids contain phosphatidylethanolamine (PE), phosphatidylethanolamine (PG), and diphosphatidylglycerol (DPG). The predominant cellular fatty acids were C, summed feature 3 (C7c and/or C6c) and summed feature 8 (C7c and/or C6c). The DNA GC content was 67.7 mol%. The ANI and dDDH values between strain CYS-02 and the closest members in the genus were ≤ 79.0 and 22.4%, respectively, and the AAI and POCP values between CYS-02 and the other related species in the family were > 70% and > 50%, respectively. The genome of strain CYS-02 showed a putative terpene biosynthetic cluster responsible for antioxidant activity which was supported by DPPH radical scavenging activity test. Based on genomic, phenotypic and chemotaxonomic analyses, strain CYS-02 was classified into a novel species in the genus , for which the name sp. nov., has been proposed. The type strain is CYS-02 (= KACC 22656 = NBRC 115645 [corrected] ).
一株白色、非运动、革兰氏阴性、杆状细菌,命名为 CYS-02,从韩国京畿道水原市采集的土壤中分离得到。细胞严格需氧,最适生长温度为 20-28°C,可水解吐温 40。基于 16S rRNA 基因序列的系统发育分析表明,菌株 CYS-02 形成了一个家族内的谱系,并聚类为属的成员。最接近的成员是 DSM 27352(98.6%序列相似性)、NBRC 15149(98.5%)和 JM-310(98.3%)。主要呼吸醌为 Q-8,主要极性脂含有磷脂酰乙醇胺(PE)、磷脂酰乙醇胺(PG)和双磷脂酰甘油(DPG)。主要细胞脂肪酸为 C、总和特征 3(C7c 和/或 C6c)和总和特征 8(C7c 和/或 C6c)。DNA GC 含量为 67.7 mol%。菌株 CYS-02 与属内最接近成员的 ANI 和 dDDH 值分别为≤79.0%和 22.4%,与该科其他相关种的 AAI 和 POCP 值分别为>70%和>50%。菌株 CYS-02 的基因组显示出一个潜在的萜烯生物合成簇,负责抗氧化活性,这一结果得到了 DPPH 自由基清除活性测试的支持。基于基因组、表型和化学分类学分析,菌株 CYS-02 被分类为属内的一个新种,命名为 sp. nov.。模式菌株为 CYS-02(=KACC 22656=NBRC 115645[更正])。