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种名新组合、属名新组合和种名新组合的比较分析揭示了螺旋体能量代谢中种间氢转移的重要性。

Comparative Analysis of gen. nov., sp. nov. and gen. nov., comb. nov. () Reveals the Importance of Interspecies Hydrogen Transfer in the Energy Metabolism of Spirochetes.

机构信息

Research Group Insect Gut Microbiology and Symbiosis, Max Planck Institute for Terrestrial Microbiologygrid.419554.8, Marburg, Germany.

Institute of Biology/Zoology, Free University of Berlin, Berlin, Germany.

出版信息

Appl Environ Microbiol. 2022 Jul 26;88(14):e0050322. doi: 10.1128/aem.00503-22. Epub 2022 Jul 11.

Abstract

Most members of the family () are associated with vertebrate hosts. However, a diverse clade of uncultured, putatively free-living treponemes comprising several genus-level lineages is present in other anoxic environments. The only cultivated representative to date is Treponema zuelzerae, isolated from freshwater mud. Here, we describe the isolation of strain RmG11 from the intestinal tract of cockroaches. The strain represents a novel genus-level lineage of and is metabolically distinct from T. zuelzerae. While T. zuelzerae grows well on various sugars, forming acetate and H as major fermentation products, strain RmG11 grew poorly on glucose, maltose, and starch, forming mainly ethanol and only small amounts of acetate and H. In contrast to the growth of T. zuelzerae, that of strain RmG11 was strongly inhibited at high H partial pressures but improved considerably when H was removed from the headspace. Cocultures of strain RmG11 with the H-consuming Methanospirillum hungatei produced acetate and methane but no ethanol. Comparative genomic analysis revealed that strain RmG11 possesses only a single, electron-confurcating hydrogenase that forms H from NADH and reduced ferredoxin, whereas T. zuelzerae also possesses a second, ferredoxin-dependent hydrogenase that allows the thermodynamically more favorable formation of H from ferredoxin via the Rnf complex. In addition, we found that T. zuelzerae utilizes xylan and possesses the genomic potential to degrade other plant polysaccharides. Based on phenotypic and phylogenomic evidence, we describe strain RmG11 as Brucepastera parasyntrophica gen. nov., sp. nov. and Treponema zuelzerae as Teretinema zuelzerae gen. nov., comb. nov. Spirochetes are widely distributed in various anoxic environments and commonly form molecular hydrogen as a major fermentation product. Here, we show that two closely related members of the family differ strongly in their sensitivity to high hydrogen partial pressure, and we explain the metabolic mechanisms that cause these differences by comparative genome analysis. We demonstrate a strong boost in the growth of the hydrogen-sensitive strain and a shift in its fermentation products to acetate during cocultivation with a H-utilizing methanogen. Our results add a hitherto unrecognized facet to the fermentative metabolism of spirochetes and also underscore the importance of interspecies hydrogen transfer in not-obligately-syntrophic interactions among fermentative and hydrogenotrophic guilds in anoxic environments.

摘要

大多数家族成员与脊椎动物宿主有关。然而,在其他缺氧环境中,存在一个多样化的未培养的、假定自由生活的密螺旋体的进化枝,包括几个属级谱系。迄今为止唯一培养的代表是从淡水泥中分离出来的 Treponema zuelzerae。在这里,我们描述了从蟑螂肠道中分离到菌株 RmG11 的情况。该菌株代表了一个新的属级谱系,与 T. zuelzerae 在代谢上不同。虽然 T. zuelzerae 可以很好地在各种糖上生长,形成乙酸和 H 作为主要发酵产物,但菌株 RmG11 在葡萄糖、麦芽糖和淀粉上生长不良,主要形成乙醇,仅产生少量乙酸和 H。与 T. zuelzerae 的生长不同,菌株 RmG11 在高 H 分压下生长受到强烈抑制,但当 H 从顶空去除时,生长得到了很大改善。菌株 RmG11 与消耗 H 的 Methanospirillum hungatei 的共培养物产生乙酸和甲烷,但不产生乙醇。比较基因组分析表明,菌株 RmG11 仅具有一种电子交错氢化酶,可将 NADH 和还原型铁氧还蛋白转化为 H,而 T. zuelzerae 还具有第二种依赖铁氧还蛋白的氢化酶,可通过 Rnf 复合物使更有利于热力学的 H 从铁氧还蛋白形成。此外,我们发现 T. zuelzerae 利用木聚糖并具有降解其他植物多糖的基因组潜力。基于表型和系统基因组学证据,我们将菌株 RmG11 描述为 Brucepastera parasyntrophica gen. nov.,sp. nov.,并将 Treponema zuelzerae 描述为 Teretinema zuelzerae gen. nov.,comb. nov.。螺旋体广泛分布于各种缺氧环境中,通常形成分子氢作为主要发酵产物。在这里,我们表明,家族的两个密切相关的成员在对高氢分压的敏感性方面存在很大差异,并且我们通过比较基因组分析解释了导致这些差异的代谢机制。我们证明,在与利用 H 的产甲烷菌共培养时,对氢敏感的菌株的生长得到了极大的促进,并且其发酵产物向乙酸转移。我们的结果为螺旋体的发酵代谢增加了一个迄今为止尚未被认识到的方面,也强调了在缺氧环境中,在非专性共生的发酵和产氢菌群之间,种间氢转移的重要性。

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