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化学多元宇宙:化学空间的扩展视角。

Chemical Multiverse: An Expanded View of Chemical Space.

机构信息

DIFACQUIM research group, Department of Pharmacy, School of Chemistry, National Autonomous University of Mexico, Mexico City, 04510, Mexico.

Department of Pharmacology, Center for Research and Advanced Studies of the National Polytechnic Institute (CINVESTAV), Mexico City, 07360, Mexico.

出版信息

Mol Inform. 2022 Nov;41(11):e2200116. doi: 10.1002/minf.202200116. Epub 2022 Aug 23.

DOI:10.1002/minf.202200116
PMID:35916110
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9787733/
Abstract

Technological advances and practical applications of the chemical space concept in drug discovery, natural product research, and other research areas have attracted the scientific community's attention. The large- and ultra-large chemical spaces are associated with the significant increase in the number of compounds that can potentially be made and exist and the increasing number of experimental and calculated descriptors, that are emerging that encode the molecular structure and/or property aspects of the molecules. Due to the importance and continued evolution of compound libraries, herein, we discuss definitions proposed in the literature for chemical space and emphasize the convenience, discussed in the literature to use complementary descriptors to obtain a comprehensive view of the chemical space of compound data sets. In this regard, we introduce the term chemical multiverse to refer to the comprehensive analysis of compound data sets through several chemical spaces, each defined by a different set of chemical representations. The chemical multiverse is contrasted with a related idea: consensus chemical space.

摘要

化学空间概念在药物发现、天然产物研究和其他研究领域的技术进步和实际应用引起了科学界的关注。大超化学空间与潜在可制造和存在的化合物数量的显著增加以及越来越多的实验和计算描述符相关联,这些描述符正在涌现,它们编码分子的结构和/或性质方面。由于化合物库的重要性和不断发展,本文讨论了文献中提出的化学空间定义,并强调了在文献中讨论的便利性,即使用补充描述符来获得化合物数据集化学空间的全面视图。在这方面,我们引入了“化学多元宇宙”一词,指的是通过几个化学空间对化合物数据集进行综合分析,每个化学空间都由不同的化学表示集定义。化学多元宇宙与一个相关的概念形成对比:共识化学空间。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60f9/9787733/76a0e887dd7d/MINF-41-2200116-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60f9/9787733/4c1ff3779507/MINF-41-2200116-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60f9/9787733/63130e966db5/MINF-41-2200116-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60f9/9787733/a925ca1a8c88/MINF-41-2200116-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60f9/9787733/76a0e887dd7d/MINF-41-2200116-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60f9/9787733/4c1ff3779507/MINF-41-2200116-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60f9/9787733/63130e966db5/MINF-41-2200116-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60f9/9787733/a925ca1a8c88/MINF-41-2200116-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60f9/9787733/76a0e887dd7d/MINF-41-2200116-g008.jpg

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