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使用 SABRE 极化报告分子筛选蛋白-配体结合

Screening of Protein-Ligand Binding Using a SABRE Hyperpolarized Reporter.

机构信息

Department of Chemistry, Texas A&M University, 3255 TAMU, College Station, Texas 77843, United States.

出版信息

Anal Chem. 2022 Aug 16;94(32):11375-11381. doi: 10.1021/acs.analchem.2c02250. Epub 2022 Aug 3.

DOI:10.1021/acs.analchem.2c02250
PMID:35921650
Abstract

Hyperpolarization through signal amplification by reversible exchange (SABRE) provides a facile means to enhance nuclear magnetic resonance (NMR) signals of small molecules containing an N-heterocycle or other binding site for a polarization transfer catalyst. A purpose-designed reporter ligand, which is capable of binding both to a target protein and to the catalyst, makes the sensitivity enhancement by this technique compatible with the measurement of a range of biomolecular interactions. The H polarization of the reporter ligand 4-amidinopyridine, which is targeting trypsin, is used to screen ligands that are not themselves hyperpolarizable by SABRE. The respective protein-ligand dissociation constants () are determined by an observed change in the relaxation rate of the reporter. A calculation of expected signal changes indicates that the accessible ligand values extend over several orders of magnitude, while the concentrations of target proteins and ligands can be reduced considering the sensitivity gains from hyperpolarization. In general, the design of a single, weakly binding ligand for a target protein enables the use of SABRE hyperpolarization for ligand screening or other biophysical studies involving macromolecular interactions.

摘要

通过信号放大可逆交换(SABRE)的超极化提供了一种简便的方法来增强含有 N-杂环或其他用于极化转移催化剂的结合位点的小分子的核磁共振(NMR)信号。一种经过专门设计的报告配体,能够同时结合靶蛋白和催化剂,使该技术的灵敏度增强与一系列生物分子相互作用的测量兼容。针对胰蛋白酶的报告配体 4-氨甲酰吡啶的 H 极化用于筛选本身不能通过 SABRE 超极化的配体。通过报告的松弛率的观察变化来确定各自的蛋白-配体离解常数(Kd)。预期信号变化的计算表明,可及配体 Kd 值跨越几个数量级,而考虑到从超极化获得的灵敏度增益,可以降低靶蛋白和配体的浓度。一般来说,为靶蛋白设计单个弱结合配体可以使 SABRE 超极化用于配体筛选或涉及大分子相互作用的其他生物物理研究。

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