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与抗PD-1/PD-L1治疗疗效相关的关键基因模块的鉴定及基于这些模块的新型特征的综合分析

Identification of Crucial Gene Modules Related to the Efficiency of Anti-PD-1/PD-L1 Therapy and Comprehensive Analyses of a Novel Signature Based on These Modules.

作者信息

Wang Wei, Dong Dong, Chen Liang, Wang Heng, Bi Bo, Liu Tianyi

机构信息

Department of Plastic and Aesthetic Surgery, Huadong Hospital, Fudan University, Shanghai, China.

Shanghai Medical College of Fudan University, Shanghai, China.

出版信息

Front Genet. 2022 Jul 22;13:893380. doi: 10.3389/fgene.2022.893380. eCollection 2022.

Abstract

Biomarker development for clinical checkpoint inhibition is still in its early stages. It is critical to determine the cause of the lack of a long-term response in patients after immune checkpoint blockade (ICB) treatment and to develop composite biomarkers or signatures to improve personalized approaches. Three modules that were significantly correlated with the immunotherapeutic response were identified. Stimulatory pathways of cellular immunity, extracellular matrix formation-related pathways, and ATP metabolism-related pathways were enriched. Two distinct transcriptional subtypes were determined. Tumor microenvironment (TME) characteristics were highly correlated with "hot" and "cold" tumors. The ICB score was significantly correlated with clinical characteristics including age, Breslow depth, Clerk level, AJCC stage, and T stage. Meanwhile, a low ICB score is characterized by increased activation of immunity, a higher level of immune infiltration, and immune molecule expression. The ICB score showed a robust ability to predict melanoma prognosis in the discovery, internal validation, and external validation cohorts. In addition, a low ICB score was linked to a higher CR/PR rate in the immunotherapeutic cohort. The ICB score could reflect the pre-existing immune features and the expression pattern of "Cold" versus "Hot" tumors in melanoma patients. Thus, it has the potential to serve as a reliable predictor of melanoma prognosis and response to ICB therapy.

摘要

用于临床检查点抑制的生物标志物开发仍处于早期阶段。确定免疫检查点阻断(ICB)治疗后患者缺乏长期反应的原因以及开发复合生物标志物或特征以改善个性化治疗方法至关重要。确定了与免疫治疗反应显著相关的三个模块。细胞免疫的刺激途径、细胞外基质形成相关途径和ATP代谢相关途径得到了富集。确定了两种不同的转录亚型。肿瘤微环境(TME)特征与“热”肿瘤和“冷”肿瘤高度相关。ICB评分与包括年龄、Breslow深度、Clerk分级、AJCC分期和T分期在内的临床特征显著相关。同时,低ICB评分的特征是免疫激活增加、免疫浸润水平较高和免疫分子表达。ICB评分在发现队列、内部验证队列和外部验证队列中显示出强大的预测黑色素瘤预后的能力。此外,在免疫治疗队列中,低ICB评分与较高的CR/PR率相关。ICB评分可以反映黑色素瘤患者预先存在的免疫特征以及“冷”肿瘤与“热”肿瘤的表达模式。因此,它有可能作为黑色素瘤预后和对ICB治疗反应的可靠预测指标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0ea2/9354784/00c8876debde/fgene-13-893380-g001.jpg

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