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[具体内容]在宫颈癌中的预后价值:生物信息学与实验方法。 (这里“[具体内容]”原文缺失,你可补充完整后再让我翻译)

Prognostic value of in cervical cancer: Bioinformatics and experimental approaches.

作者信息

Chen Huan, Chen Xupeng, Zeng Fanhua, Fu Aizhen, Huang Meiyuan

机构信息

Department of Obstetrics and Gynecology, Zhu Zhou Central Hospital, Zhuzhou, Hunan China.

Laboratory Medicine Center, Zhu Zhou Central Hospital, Zhuzhou, Hunan China.

出版信息

Front Genet. 2022 Aug 8;13:939328. doi: 10.3389/fgene.2022.939328. eCollection 2022.

Abstract

Among gynecological cancers, cervical cancer is a common malignancy and remains the leading cause of cancer-related death for women. However, the exact molecular pathogenesis of cervical cancer is not known. Hence, understanding the molecular mechanisms underlying cervical cancer pathogenesis will aid in the development of effective treatment modalities. In this research, we attempted to discern candidate biomarkers for cervical cancer by using multiple bioinformatics approaches. First, we performed differential expression analysis based on cervical squamous cell carcinoma and endocervical adenocarcinoma data from The Cancer Genome Atlas database, then used differentially expressed genes for weighted gene co-expression network construction to find the most relevant gene module for cervical cancer. Next, the Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses were performed on the module genes, followed by using protein-protein interaction network analysis and Cytoscape to find the key gene. Finally, we validated the key gene by using multiple online sites and experimental methods. Through weighted gene co-expression network analysis, we found the turquoise module was the highest correlated module with cervical cancer diagnosis. The biological process of the module genes focused on cell proliferation, cell adhesion, and protein binding processes, while the Kyoto Encyclopedia of Genes and Genomes pathway of the module significantly enriched pathways related to cancer and cell circle. Among the module genes, was identified as the hub gene, and its expression was associated with cervical cancer prognosis. We found the expression of correlates with cancer-associated fibroblast immune infiltration in immune cells by Timer2.0. Furthermore, cancer-associated fibroblast infiltration is linked to cervical cancer patients' prognosis. Compared to those in normal adjacent, immunohistochemical and real-time quantitative polymerase chain reaction (qPCR) showed that the protein and mRNA expression of in cervical cancer were higher. Therefore, the gene acts as an oncogene in cervical cancer, interactive with immune infiltration of cancer-associated fibroblasts, thereby affecting the prognosis of patients with cervical cancer.

摘要

在妇科癌症中,宫颈癌是一种常见的恶性肿瘤,仍然是女性癌症相关死亡的主要原因。然而,宫颈癌的确切分子发病机制尚不清楚。因此,了解宫颈癌发病机制的分子机制将有助于开发有效的治疗方法。在本研究中,我们试图通过多种生物信息学方法识别宫颈癌的候选生物标志物。首先,我们基于来自癌症基因组图谱数据库的宫颈鳞状细胞癌和宫颈管腺癌数据进行差异表达分析,然后使用差异表达基因构建加权基因共表达网络,以找到与宫颈癌最相关的基因模块。接下来,对模块基因进行基因本体论和京都基因与基因组百科全书富集分析,随后使用蛋白质-蛋白质相互作用网络分析和Cytoscape软件找到关键基因。最后,我们通过多个在线网站和实验方法验证了关键基因。通过加权基因共表达网络分析,我们发现绿松石模块是与宫颈癌诊断相关性最高的模块。模块基因的生物学过程主要集中在细胞增殖、细胞黏附和蛋白质结合过程,而模块的京都基因与基因组百科全书通路显著富集了与癌症和细胞周期相关的通路。在模块基因中, 被确定为枢纽基因,其表达与宫颈癌预后相关。我们通过Timer2.0发现 基因的表达与免疫细胞中癌症相关成纤维细胞的免疫浸润相关。此外,癌症相关成纤维细胞浸润与宫颈癌患者的预后有关。与正常相邻组织相比,免疫组织化学和实时定量聚合酶链反应(qPCR)显示,宫颈癌中 基因的蛋白质和mRNA表达更高。因此, 基因在宫颈癌中作为癌基因发挥作用,与癌症相关成纤维细胞的免疫浸润相互作用,从而影响宫颈癌患者的预后。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aad3/9394184/c0d7d038b8ad/fgene-13-939328-g001.jpg

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