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通过生物信息学分析筛选和鉴定宫颈癌易感性基因,并构建一个与线粒体自噬相关基因的诊断模型。

Screening and identification of susceptibility genes for cervical cancer via bioinformatics analysis and the construction of an mitophagy-related genes diagnostic model.

机构信息

Department of Gynecology, The People's Hospital of Pingyang, Wenzhou, 325400, China.

出版信息

J Cancer Res Clin Oncol. 2024 Sep 19;150(9):423. doi: 10.1007/s00432-024-05952-7.

DOI:10.1007/s00432-024-05952-7
PMID:39294534
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11410911/
Abstract

PURPOSE

This study aims to utilize bioinformatics methods to systematically screen and identify susceptibility genes for cervical cancer, as well as to construct and validate an mitophagy-related genes (MRGs) diagnostic model. The objective is to increase the understanding of the disease's pathogenesis and improve early diagnosis and treatment.

METHOD

We initially collected a large amount of genomic data, including gene expression profile and single nucleotide polymorphism (SNP) data, from the control group and Cervical cancer (CC) patients. Through bioinformatics analysis, which employs methods such as differential gene expression analysis and pathway enrichment analysis, we identified a set of candidate susceptibility genes associated with cervical cancer.

RESULTS

MRGs were extracted from single-cell RNA sequencing data, and a network graph was constructed on the basis of intercellular interaction data. Furthermore, using machine learning algorithms, we constructed a clinical prognostic model and validated and optimized it via extensive clinical data. Through bioinformatics analysis, we successfully identified a group of genes whose expression significantly differed during the development of CC and revealed the biological pathways in which these genes are involved. Moreover, our constructed clinical prognostic model demonstrated excellent performance in the validation phase, accurately predicting the clinical prognosis of patients.

CONCLUSION

This study delves into the susceptibility genes of cervical cancer through bioinformatics approaches and successfully builds a reliable clinical prognostic model. This study not only helps uncover potential pathogenic mechanisms of cervical cancer but also provides new directions for early diagnosis and treatment of the disease.

摘要

目的

本研究旨在利用生物信息学方法系统筛选和鉴定宫颈癌易感基因,并构建和验证与线粒体自噬相关的基因(MRGs)诊断模型。目的是提高对疾病发病机制的认识,改善早期诊断和治疗。

方法

我们最初从对照组和宫颈癌(CC)患者中收集了大量基因组数据,包括基因表达谱和单核苷酸多态性(SNP)数据。通过生物信息学分析,如差异基因表达分析和途径富集分析,我们确定了一组与宫颈癌相关的候选易感基因。

结果

从单细胞 RNA 测序数据中提取 MRGs,并基于细胞间相互作用数据构建网络图。此外,我们使用机器学习算法构建了一个临床预后模型,并通过广泛的临床数据进行验证和优化。通过生物信息学分析,我们成功鉴定了一组在 CC 发展过程中表达显著差异的基因,并揭示了这些基因参与的生物学途径。此外,我们构建的临床预后模型在验证阶段表现出优异的性能,能够准确预测患者的临床预后。

结论

本研究通过生物信息学方法探讨了宫颈癌的易感基因,并成功构建了一个可靠的临床预后模型。本研究不仅有助于揭示宫颈癌的潜在发病机制,还为疾病的早期诊断和治疗提供了新的方向。

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