Eye Center of Xiangya Hospital, Central South University, Changsha, China.
Hunan Key Laboratory of Ophthalmology, Changsha, China.
Front Immunol. 2022 Aug 11;13:914108. doi: 10.3389/fimmu.2022.914108. eCollection 2022.
Skin cutaneous melanoma (SKCM) is a malignant tumor with high mortality rate in human, and its occurrence and development are jointly regulated by genes and the environment. However, the specific pathogenesis of SKCM is not completely understood. In recent years, an increasing number of studies have reported the important role of competing endogenous RNA (ceRNA) regulatory networks in various tumors; however, the complexity and specific biological effects of the ceRNA regulatory network of SKCM remain unclear. In the present study, we obtained a ceRNA regulatory network of long non-coding RNAs, microRNAs, and mRNAs related to the phosphatase and tensin homolog () in SKCM and identified the potential diagnostic and prognostic markers related to SKCM. We extracted the above three types of RNA involved in SKCM from The Cancer Genome Atlas database. Through bioinformatics analysis, the -hsa-miR-186-5p/hsa-miR-616-3p/hsa-miR-135a-5p/hsa-miR-23b-3p/hsa-miR-374b-5p-// and -hsa-miR-135a-5p/hsa-miR-23b-3p/hsa-miR-374b-5p-/ ceRNA networks were found to be related to the prognosis of SKCM. Finally, we determined the // and / axes in ceRNA as a clinical prognostic model using correlation and Cox regression analyses. Additionally, we explored the possible role of these two axes in affecting gene expression and immune microenvironment changes and the occurrence and development of SKCM through methylation and immune infiltration analyses. In summary, the ceRNA-based // and / axes may be a novel and important approach for the diagnosis and prognosis of SKCM.
皮肤黑色素瘤(SKCM)是一种死亡率很高的人类恶性肿瘤,其发生和发展受基因和环境的共同调节。然而,SKCM 的具体发病机制尚不完全清楚。近年来,越来越多的研究报道了竞争内源性 RNA(ceRNA)调控网络在各种肿瘤中的重要作用;然而,SKCM 的 ceRNA 调控网络的复杂性和具体生物学效应仍不清楚。在本研究中,我们获得了与 SKCM 中的磷酸酶和张力蛋白同源物()相关的长非编码 RNA、microRNA 和 mRNA 的 ceRNA 调控网络,并鉴定了与 SKCM 相关的潜在诊断和预后标志物。我们从癌症基因组图谱数据库中提取了上述三种与 SKCM 相关的 RNA。通过生物信息学分析,发现与 SKCM 预后相关的-hsa-miR-186-5p/hsa-miR-616-3p/hsa-miR-135a-5p/hsa-miR-23b-3p/hsa-miR-374b-5p-//和-hsa-miR-135a-5p/hsa-miR-23b-3p/hsa-miR-374b-5p-/ceRNA 网络。最后,我们通过相关性和 Cox 回归分析确定 ceRNA 中的//和/轴为临床预后模型。此外,我们通过甲基化和免疫浸润分析探讨了这两个轴通过影响基因表达和免疫微环境变化来影响 SKCM 发生和发展的可能作用。总之,基于 ceRNA 的//和/轴可能是 SKCM 诊断和预后的一种新的重要方法。