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从麦麸叶际中分离出嗜热解糖芽孢杆菌 WB17 菌株及其对糖基和半纤维素复合酶系的基因组分析。

Isolation of Saccharibacillus WB17 strain from wheat bran phyllosphere and genomic insight into the cellulolytic and hemicellulolytic complex of the Saccharibacillus genus.

机构信息

Université de Reims Champagne Ardenne, INRAE, FARE, UMR A 614, Chaire AFERE, 51097, Reims, France.

出版信息

Braz J Microbiol. 2022 Dec;53(4):1829-1842. doi: 10.1007/s42770-022-00819-w. Epub 2022 Aug 30.

Abstract

The microorganisms living on the phyllosphere (the aerial part of the plants) are in contact with the lignocellulosic plant cell wall and might have a lignocellulolytic potential. We isolated a Saccharibacillus strain (Saccharibacillus WB17) from wheat bran phyllosphere and its cellulolytic and hemicellulolytic potential was investigated during growth onto wheat bran. Five other type strains from that genus selected from databases were also cultivated onto wheat bran and glucose. Studying the chemical composition of wheat bran residues by FTIR after growth of the six strains showed an important attack of the stretching C-O vibrations assigned to polysaccharides for all the strains, whereas the C = O bond/esterified carboxyl groups were not impacted. The genomic content of the strains showed that they harbored several CAZymes (comprised between 196 and 276) and possessed four of the fifth modules reflecting the presence of a high diversity of enzymes families. Xylanase and amylase activities were the most active enzymes with values reaching more than 4746 ± 1400 mIU/mg protein for the xylanase activity in case of Saccharibacillus deserti KCTC 33693 and 452 ± 110 mIU/mg protein for the amylase activity of Saccharibacillus WB17. The total enzymatic activities obtained was not correlated to the total abundance of CAZyme along that genus. The Saccharibacillus strains harbor also some promising proteins in the GH30 and GH109 modules with potential arabinofuranosidase and oxidoreductase activities. Overall, the genus Saccharibacillus and more specifically the Saccharibacillus WB17 strain represent biological tools of interest for further biotechnological applications.

摘要

栖息在叶际(植物的气生部分)的微生物与木质纤维素植物细胞壁接触,可能具有木质纤维素降解潜力。我们从麦麸叶际分离到一株节杆菌(Saccharibacillus WB17),并研究了其在麦麸上生长时的纤维素酶和半纤维素酶活性。从数据库中选择了该属的另外 5 个模式菌株,也在麦麸和葡萄糖上进行了培养。对 6 株菌生长后麦麸残渣的化学组成进行傅里叶变换红外光谱(FTIR)分析表明,所有菌株都对多糖的伸展 C-O 振动产生了重要的攻击,而 C=O 键/酯化羧基则没有受到影响。菌株的基因组含量表明,它们携带多种 CAZymes(196 到 276 个之间),并拥有 4 个第 5 个模块,反映出存在高度多样化的酶家族。木聚糖酶和淀粉酶活性是最活跃的酶,在沙漠节杆菌 KCTC 33693 中,木聚糖酶活性的数值达到 4746 ± 1400 mIU/mg 蛋白,Saccharibacillus WB17 的淀粉酶活性达到 452 ± 110 mIU/mg 蛋白。获得的总酶活性与该属 CAZymes 的总丰度无关。节杆菌属还携带一些有前途的 GH30 和 GH109 模块蛋白,具有潜在的阿拉伯呋喃糖苷酶和氧化还原酶活性。总的来说,节杆菌属,特别是 Saccharibacillus WB17 菌株,代表了进一步生物技术应用的有价值的生物工具。

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