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用于增强植物病害可视化的偏振观测值。

Polarimetric observables for the enhanced visualization of plant diseases.

机构信息

Optics Group, Physics Department, Universitat Autònoma de Barcelona, 08193, Bellaterra, Spain.

LPICM, CNRS, Ecole Polytechnique, Institut Polytechnique de Paris, 91120, Palaiseau, France.

出版信息

Sci Rep. 2022 Aug 30;12(1):14743. doi: 10.1038/s41598-022-19088-6.

DOI:10.1038/s41598-022-19088-6
PMID:36042370
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9428171/
Abstract

This paper highlights the potential of using polarimetric methods for the inspection of plant diseased tissues. We show how depolarizing observables are a suitable tool for the accurate discrimination between healthy and diseased tissues due to the pathogen infection of plant samples. The analysis is conducted on a set of different plant specimens showing various disease symptoms and infection stages. By means of a complete image Mueller polarimeter, we measure the experimental Mueller matrices of the samples, from which we calculate a set of metrics analyzing the depolarization content of the inspected leaves. From calculated metrics, we demonstrate, in a qualitative and quantitative way, how depolarizing information of vegetal tissues leads to the enhancement of image contrast between healthy and diseased tissues, as well as to the revelation of wounded regions which cannot be detected by means of regular visual inspections. Moreover, we also propose a pseudo-colored image method, based on the depolarizing metrics, capable to further enhance the visual image contrast between healthy and diseased regions in plants. The ability of proposed methods to characterize plant diseases (even at early stages of infection) may be of interest for preventing yield losses due to different plant pathogens.

摘要

本文重点介绍了偏振方法在植物病变组织检测中的应用潜力。我们展示了由于植物样本受到病原体感染,去极化可观察量如何成为准确区分健康组织和病变组织的合适工具。该分析基于一组显示不同疾病症状和感染阶段的不同植物标本进行。通过使用完整的图像 Mueller 偏振计,我们测量了样本的实验 Mueller 矩阵,从中我们计算了一组度量值,用于分析所检查叶片的去极化含量。从计算出的度量值中,我们以定性和定量的方式展示了植物组织的去极化信息如何增强健康组织和病变组织之间的图像对比度,以及揭示常规目视检查无法检测到的受伤区域。此外,我们还提出了一种基于去极化度量的伪彩色图像方法,能够进一步增强植物中健康和病变区域之间的视觉图像对比度。所提出的方法对植物疾病进行特征描述的能力(即使在感染的早期阶段)可能有助于防止因不同植物病原体而导致的产量损失。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/287cd1598d8c/41598_2022_19088_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/ae50514f3c5a/41598_2022_19088_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/636b599025ff/41598_2022_19088_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/b0c0be2bd73b/41598_2022_19088_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/060bedeb41fd/41598_2022_19088_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/2a32b71d656c/41598_2022_19088_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/287cd1598d8c/41598_2022_19088_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/ae50514f3c5a/41598_2022_19088_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/636b599025ff/41598_2022_19088_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/b0c0be2bd73b/41598_2022_19088_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/060bedeb41fd/41598_2022_19088_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/2a32b71d656c/41598_2022_19088_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/306a/9428171/287cd1598d8c/41598_2022_19088_Fig6_HTML.jpg

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本文引用的文献

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Unraveling the physical information of depolarizers.揭示去极化剂的物理信息。
Opt Express. 2021 Nov 8;29(23):38811-38823. doi: 10.1364/OE.438673.
2
Polarimetric data-based model for tissue recognition.基于偏振数据的组织识别模型。
Biomed Opt Express. 2021 Jul 15;12(8):4852-4872. doi: 10.1364/BOE.426387. eCollection 2021 Aug 1.
3
Polarimetric imaging microscopy for advanced inspection of vegetal tissues.偏振成像显微镜在植物组织高级检测中的应用。
Sci Rep. 2021 Feb 16;11(1):3913. doi: 10.1038/s41598-021-83421-8.
4
Visualization of White Matter Fiber Tracts of Brain Tissue Sections With Wide-Field Imaging Mueller Polarimetry.宽场成像穆勒偏光显微镜下脑组织切片的白质纤维束可视化。
IEEE Trans Med Imaging. 2020 Dec;39(12):4376-4382. doi: 10.1109/TMI.2020.3018439. Epub 2020 Nov 30.
5
Depolarization metric spaces for biological tissues classification.用于生物组织分类的去极化度量空间。
J Biophotonics. 2020 Aug;13(8):e202000083. doi: 10.1002/jbio.202000083. Epub 2020 May 25.
6
Colon cancer detection by using Poincaré sphere and 2D polarimetric mapping of ex vivo colon samples.利用庞加莱球和离体结肠样本的二维偏光测绘进行结肠癌检测。
J Biophotonics. 2020 Aug;13(8):e202000082. doi: 10.1002/jbio.202000082. Epub 2020 May 28.
7
Mueller matrix polarimetry for characterization of skin tissue samples: A review.用于表征皮肤组织样本的穆勒矩阵偏振测量法综述
Photodiagnosis Photodyn Ther. 2020 Jun;30:101708. doi: 10.1016/j.pdpdt.2020.101708. Epub 2020 Mar 4.
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